SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10160

Length: 1407 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10160

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2B7

Fln msg:

Fln protein: MAAANSSWDWGYYDNLILDTDFSLAISRSLCDEWMHGDVYNMLASTPSPQIFQQPQLSILSLDNEGESSEAAASYFCQIQGLSQDNNPRCKRRRMLLFPGDEAFGQSCMASDDPFHQYGSIRNNSGYDSYRSACESMQLPESSSSSLWLSGNDDFLGSKNACMEQCPEKWMPKYVTEQLLQESSTDGSMNISLPVSDAQEMQDLMSPDLHSFLAKPARGRLSVEGIQNDNPWPAPKSKLATPVAYPFSVLKPSGVEGDVTLNDINKRILMPPTRPIQHPVGDYARPPSSASTGAGLSGKAVVALTKIHTEGKGTITIMRTKG*

Protein Length: 324

Fln nts: ATGGGGAGCCTAACTCATATCTGAGACTCTCAGTGTGTGCTATGTATCCACACCCACCACTACTAGCGTA_-_ATGGCAGCAGCAAACAGCTCTTGGGACTGGGGGTACTATGATAATCTAATTCTCGACACAGATTTCTCTTTGGCAATATCTCGATCGCTCTGTGATGAATGGATGCATGGCGATGTTTACAATATGCTTGCATCGACACCTTCGCCCCAGATATTTCAGCAACCCCAACTGTCAATCTTGTCCCTTGATAATGAAGGTGAATCCAGTGAGGCAGCTGCTTCTTATTTTTGCCAAATTCAAGGCTTATCTCAAGATAATAATCCCCGTTGTAAAAGAAGACGAATGCTTCTATTTCCTGGAGATGAGGCTTTTGGTCAATCATGTATGGCGTCCGATGATCCCTTCCACCAGTATGGATCCATAAGGAACAATTCCGGCTATGACAGCTACAGAAGTGCATGTGAGAGCATGCAGCTCCCTGAATCAAGTTCTAGTTCTCTCTGGTTATCTGGTAATGATGACTTTCTTGGCTCCAAAAATGCATGCATGGAACAATGCCCTGAGAAATGGATGCCAAAATATGTTACGGAACAGCTTCTTCAGGAGTCAAGTACCGATGGATCAATGAACATCTCGCTACCTGTCTCTGATGCACAAGAAATGCAAGATTTGATGAGTCCCGACTTGCATTCATTCCTAGCCAAACCTGCAAGAGGGAGGCTCTCAGTTGAAGGAATACAGAATGACAATCCATGGCCGGCTCCAAAGTCCAAATTGGCCACGCCAGTGGCATATCCATTCTCTGTGTTAAAACCAAGTGGAGTTGAAGGAGACGTGACGCTGAACGATATCAATAAGCGCATTCTGATGCCTCCCACTAGACCAATCCAACATCCCGTTGGTGATTATGCGAGGCCTCCGTCTTCTGCTTCAACAGGCGCTGGGCTTTCTGGAAAGGCTGTTGTTGCTCTCACCAAAATACACACAGAGGGCAAAGGAACCATCACGATTATGCGGACAAAAGGCTGA___TTGAATCTCCCATCCAATAATGTCAGCCACTCCTTGTCCATAACTTCTGAAGCATTTTTCACTGGATTTCTTCTATTATAGGGCAGTTCATGTATATTATCACGAGGTTGAGTTGCATGAGAGATGTCCAATCAGTATCGTATTATTTCAGAAATCTGAGAGAAAGCATTATGGCTTGTTACTTATTCGGGTTTGGTGAGATTCGCTTTGATTTGATATACCAGGTATACCAGAAAATTGTAATATGTACATATTATTGTTGTAATCTGCTTATATTCTGCATTTTAGTCCCATGGAGTAATGTGCATTCTTTCACATTGATCAGTAGCAACAGCTCAGCTGGTTAAGGTCTAATTTGTGAGTAGGCC

Fln Alignment:

Contig10160___TTTSVMAAANSSWDWGYYDNLILDTDFSLAISRSLCDEWMHGDVYNMLASTPSPQIFQQPQLSILSLDNEGESSEAAASYFCQIQGLSQDNNPRCKRRRMLLFPGDEAFGQSCMASDDPFHQYGSIRNNSGYDSYRSACESMQLPEXXXXXXXXXGNDDFLGSKNACMEQCPEKWMPKYVTEQLLQESSTDGSMNISLPVSDAQEMQDLMSPDLHSFLAKPARGRLSVEGIQNDNPWPAPKSKLATPVAYPFSVLKPSGVEGDVTLNDINKRILMPPTRPIQHPVGDYARPPSSASTGAGLSGKAVVALTKIHTEGKGTITIMRTKG
A9P2B7_______________TPTSVMAAANSPWDWGYYENLILDTDFSLAISRSLCDEWMHGDVHNMLASTPSPQIIQQPQLSILSLDNEGKSTQAAASYFCQIQDFSQDNNPRCKRRRMLLFPGDEAFGQSCMTSDDPFHQYGSIRNNSGYDNFRSACESMQLPESSSSSLWLSGNDDFLGSKNVCVEQCPEKWMPNCISEQLLQESSVDGSMNISLPVSDAQEMQDLISPDLHSFLAKPSRGRLSLEGVQKDYPGPARKAKLATPVAYPFAVLKPSGVEGDVTLNDINKRILMPPTRPIQHPVGDYARPPSSASTGAGLSGKAVVALTKIHTEGKGTITIMRTKG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
717	25	75			0.996473
747	75		25		0.996473
864		14		85	0.993533
1050		11		88	0.992527
1066	11		88		0.992527
1095	85		14		0.994477
1148			60	40	1.0
1187		20		80	0.996423
1201			20	80	0.996423

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain