SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10151

Length: 1833 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10151 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[P] COG1230 Co/Zn/Cd efflux system component	-	-	1.0e-12	25%
FL-Next	sp=Metal tolerance protein C2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	74%
Blast2go	metal tolerance protein c2	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	83%
Blast2go	cation transport	GO:0006812	Biological Process	83%
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	efflux transmembrane transporter activity	GO:0015562	Molecular Function	83%
Blast2go	cation transmembrane transporter activity	GO:0008324	Molecular Function	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	NUDIX hydrolase domain	IPR000086	-	-
Sma3	Cation efflux protein	IPR002524	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6ICY4

Fln msg: your sequence is longer than subject: 467 - 393

Fln protein: MEHRRHHHYHQNEEIVSGNAMEPATSKVDLDLKTEKLVSPRYSAIGSKSFGYRNPEQEENLDRRFAFSRQSSFKQNPTQPSISIIPNETLKPSLSRSLSSISRDHYHNQHHHHHNHHLFSNSQLSDKTTPLLEDGQLGKGVLVSAETSGKKPNFNSYGSFRHSDSLFGLVWTAIPIISSGSRPMRRLFTLIMLNVAYSTLELLIGLFTGRVGLVSDAFHLTFGCGVLSFSLFAMAVARKKPDDVYSYGYKRVEVLSAFTNALFLLFLSFSLAVEALHAFMQDESEHKHYLIVSAVANLLVNLLGVWFFRGYARVYIVYRKAEDMNYHSVCLHVLSDSIRSAGLILASWLLSLGIKNAEMLCLGLVSIAIFIVVMPLFKEAAGILLQTAPSGISSSAFNKCLRQINILEDVSEVSQARFWEMVPGFVVGSLSLQLKKGSDEYKILKHVHSSYSDIGVKDLTVQTDFV*

Protein Length: 468

Fln nts: GTCATGTGTCTACACGGCTAGACCACGGCCAGAAGAATCGTCGTGACCTTGGCTGTCACTCAATATTTTTTACTTTGTCTTTGCGTGTGCTTTTCCTGAATTTATTTTTGCAATCGATCGCCTGTGCCTGGAGACGATTCTGGTTTCTTCGTCAACTGAGGCTAGCGAATCGTGGTTGAGGGATGCGATCGAAAACGACTTCATTGGCATTTGACGTGCATGCAGAGATTCCGAATTCTCTATAGCA_-_ATGGAACACCGTCGTCACCACCATTATCACCAGAACGAGGAAATTGTGTCTGGAAACGCGATGGAGCCCGCAACATCTAAGGTAGATCTAGATTTGAAAACCGAAAAGCTAGTTTCTCCTCGTTATTCGGCAATAGGAAGCAAATCATTTGGCTATCGAAACCCCGAGCAAGAAGAAAATTTGGACCGCAGGTTTGCATTCAGCCGTCAAAGCTCTTTCAAACAAAACCCAACCCAGCCTTCAATTTCTATCATCCCTAATGAAACCCTAAAACCTTCGCTATCCCGAAGCTTATCCAGCATATCCCGTGATCACTATCATAACCAACACCATCACCATCATAACCACCATCTATTTAGCAATTCTCAATTGTCGGACAAGACAACGCCTTTGTTAGAAGATGGACAGTTGGGGAAAGGTGTTCTGGTCAGTGCTGAGACTAGTGGTAAGAAGCCCAATTTTAACAGCTATGGCTCTTTCCGGCATTCGGACTCCTTGTTCGGACTTGTGTGGACGGCGATTCCGATCATCAGCTCTGGAAGCCGTCCGATGAGGAGACTTTTTACTTTAATTATGCTTAACGTTGCTTATTCGACCTTGGAACTGCTTATTGGACTCTTCACCGGGCGTGTAGGTTTGGTATCAGATGCATTTCATTTAACATTTGGTTGTGGTGTGCTATCCTTTTCCTTATTTGCAATGGCAGTTGCCAGGAAGAAACCTGACGATGTGTATTCCTATGGGTACAAGCGAGTAGAGGTTCTATCAGCTTTTACAAATGCTCTATTTCTTTTGTTTCTTTCATTTTCCCTTGCCGTGGAAGCATTGCATGCATTCATGCAGGATGAATCAGAGCACAAGCATTATTTGATTGTATCTGCTGTTGCAAACCTTTTGGTGAACCTTCTGGGTGTCTGGTTTTTCCGAGGGTATGCACGTGTTTATATTGTGTATAGAAAAGCTGAAGACATGAATTACCATTCGGTTTGCTTGCATGTGCTCTCTGATTCCATTCGAAGTGCAGGATTGATCCTAGCATCATGGCTTTTATCTCTTGGGATAAAGAATGCAGAAATGTTATGTCTCGGTTTGGTATCCATTGCTATTTTCATTGTGGTAATGCCACTCTTTAAAGAAGCCGCGGGCATTTTGCTACAAACAGCACCATCTGGCATATCTTCATCAGCGTTCAACAAATGCCTTAGACAGATTAATATTCTCGAGGATGTATCTGAAGTTTCACAGGCTCGATTCTGGGAAATGGTACCAGGCTTTGTAGTAGGTTCACTGTCATTGCAGTTGAAGAAAGGGTCCGATGAGTATAAAATTTTGAAGCATGTGCATAGTTCATACAGTGATATTGGAGTAAAGGATTTGACTGTCCAGACGGATTTTGTATAA___GTATTGTATTGCAAAGTCTCCATCTAAGAAATTAGCAGGGAGCATATGCATTACAGCAGGATGCTGACATGTTGATAGACTATAGCTGGTCTTGGGTAACTTCTTTAAAGGTCCCGTTTATCATTTTTTTGTGTTTCCATCGATTGGCATAACAATTATATGATATATCACTTAAAGAACGTTTT

Fln Alignment:

Contig10151___SLFGLVWTAIPIISSGSRPMRRLFTLIMLNVAYSTLELLIGLFTGRVGLVSDAFHLTFGCGVLSFSLFAMAVARKKPDDVYSYGYKRVEVXXXXXXXXXXXXXXXXXXXXXLHAFMQDESEHKHYLIVSXXXXXXXXXLGVWFFRGYARVYIVYRKAEDMNYHSVCLHVLSDSIRSAGLILASWLLSLGIKNAEMLCLGLVSIAIFIVVMPLFKEAAGILLQTAPSGISSSAFNKCLRQINILEDVSEVSQARFWEMVPGFVVGSLSLQLKKGSDEYKILKHVHSSYSDIGVKDLTVQTDF
Q6ICY4_______________SVLEMVWEVFGVVTSGNRQMKRLFLLIALNVLYSTTELSIGIFTGRVGLVSDAFHLTFGCGLLTFSLFAMATSRKKPDHAYSYGYKRLEVLSAFTNALFLMFMSFSLAVEALHAFIQDESEHKHYLIVSAVTNLLVNLLGVWFFRNYARVNIAYRKAEDMNYHSVCLHVISDSIRSAGLILASWLLSLGVENAEVLCLGLVSVTVFMLVMPLFKATGGVLLQMAPPNIPSSALSKCLRQITSREDVTEVLQARFWEVVPGHTVGSLRLQVKSGIDERPLLQYVYDVYHDLGVQDLTLQTDY

SNPs (tot: 105)

Position	A %	C %	G %	T %	Probability
322	90		10		0.90298
323		90		10	0.90298
324		90	10		0.90298
328			10	90	0.90298
330	10	90			0.90298
331	10	90			0.90298
334	90			10	0.90298
335	80	20			0.999996
337		88		11	0.923564
341	12	87			0.992554
343	12		12	75	0.975346
345	12	12		75	0.975346
346		12	87		0.992554
347	75			25	1.0
348	75		25		1.0
349	87		12		0.992554
350		87	12		0.992554
351	25			75	1.0
352		12	25	62	1.0
353	12	87			0.992554
356	71		28		1.0
363		71	28		1.0
364	28			71	1.0
374			40	60	1.0
376	60		40		1.0
379	40			60	1.0
381		40		60	1.0
388		20		40	1.0
391	20	40		40	1.0
392			40	60	1.0
393	40			60	1.0
394		40		20	1.0
412	66	33			0.997452
413		33		66	0.997452
415	33			66	0.997452
417		66	33		0.997452
422		33		66	0.997452
1112	14		85		0.993533
1360		16	83		0.994512
1401		75		25	1.0
1417	12			87	0.992554
1418		87	12		0.992554
1420			12	87	0.992554
1421	12	87			0.992554
1422		12		87	0.992554
1423	12			87	0.992554
1428	12		87		0.992554
1429	12		87		0.992554
1474			88	11	0.923564
1478	87			12	0.992554
1479	87		12		0.992554
1483	87			12	0.992554
1487		14		85	0.993533
1488	14			85	0.993533
1489	14			85	0.993533
1490		85	14		0.993533
1492			57	42	1.0
1493	14			85	0.993533
1494		14		85	0.993533
1495			14	85	0.993533
1496	14			85	0.993533
1498	85		14		0.993533
1536	9		90		0.999842
1735	59			27	1.0
1737	59		40		1.0
1739	59		40		1.0
1741			40	59	1.0
1742	40		4		1.0
1744	40			13	1.0
1745			45	54	1.0
1746		40	13	45	1.0
1747	13	40	40	4	1.0
1749	86		13		1.0
1750	13	4	81		1.0
1751	40			4	1.0
1753	4			40	1.0
1756	4	77	9		0.999071
1757	9		86		0.999642
1759		47	14	38	1.0
1760	4	4	76	14	1.0
1761	16	58	25		1.0
1762	16	25	58		1.0
1763	66	16	16		0.999991
1764	25	8		50	1.0
1766	60	40			1.0
1770	50	10	30	10	1.0
1773	62	37			1.0
1775	62	37			1.0
1776	50		37		1.0
1778	50	37		12	1.0
1779			12	37	1.0
1782	14			42	1.0
1783	14		85		0.993533
1784	80			20	0.995493
1785	20		80		0.995493
1788	80			20	0.995493
1789		80		20	0.995493
1790	80			20	0.995493
1791			80	20	0.995493
1792	20	80			0.995493
1793		80	20		0.995493
1800	80		20		0.995493
1802			80	20	0.995493
1804		80		20	0.995493
1805	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain