SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10133

Length: 2037 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene10133
ATGGGGGCTACACATGCAAATTAGGCTCAGTCCTCGTCAAGCCCCATCTGACCGACTCTCTAACGTACCTACTTAAATACCGTCGTGACCTTGGCTGTCACTCAACTTGATTTGCATTTTCTTGGTTCGAGTCTACTGTTCGAATCGCGGGAACGGATAAACCAGTGGATCGCAGAAAAAATTGAGAAAATTTAAGGCTCCTTGAGTTTTCGACGGTCAAGAACAATTAATTGACAGGAGGTGTTGTCGCAATGAGGAGAGCTTTAAATTCCCTCCAAGAACAGCTCGCAGAAGCTGTCTACGGCACGGGAATGTACGGCAGGAATCCCACAAACACGGAATCCCGTTATGTGGCAGACACCGTAAAAGGATCCCACGATTTAACCATCGTGGGATTTTCTCTGGCCAAGGGCATGGGTGTCGGTAATTTCCTTGCGAGCGAGACTTTCAGCGTCGGAGGATACGACTGGGCCATTTACTTTTACCCCGACGGAAAAAACCCTGAAGACAATTCTCTGTATGTTTCGGTTTTCGTGGCTTTGGTCAGCGAGGGCACTGATGTGAGGGCTAAGTTTGAATTGAGGCTGATTGACCAGAGCGGCAAGGGGAGGCACAAAGTTCATAGCCATTTTGAACGCAGCCTTGAACGCGGGCCTTACACTTTGAAATACCACGGAAGCATGTGGGGTTACAAACGTTTCTACAGGCGAGCTCAGTTGGAAGTATCAGATTTTGTAAAGGATGATACTCTGAAAATATGTTGCACAGTTGGGGTTGTGGTTTCTGCTATTCACGGCCCTACATTGCACTATATTCATATTCCTGAATCAAACTTGGGCCAACAATTTGGGGCACTTCTTGAAGATGTGGAAAATGCAGATGTCACATTTGATGTATCAGGGGAAAAATTTCATGCTCACAAAGTGGTTCTGGCAGCACGTTCACCTGTATTTAAATCCATGTTTTTTGGGCCCACCCAGGATGATTGGAATGACAAAGAAATTAGCATTGAAGATACAAGGCCAGAGGTGTTTAAGGCTATGTTGCACTTTATTTACAAAGATACCCTTCCAGATTTAGAGGAGCATGGAGATTTAGAAGAGCTTTCTGATCCATCCCCTTGCTTTTTGACACCTGAGACAATGATCGAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCACAAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATTCAAGAACGATTGAAACATAAAGAGAAAAGCTGGAGTGCACCAAGTCATGAATCAAATGCCTCTGACAGCAACATATAAGGACACGACAAACTTAGTGATACAATCTACAGTGAGAAATCTGAAAATTCTGATTAGTTGAATGACACTAATTTTGAGGTATTTCTGGCTTTGGGGAGAAATTAACCAAGATGTCCCTGAAGCAGAAATGAAAGATTTTTTCCACTCTGGAAATCCTTGAGGTGACGACTTTGTAAGATGCATCCCAGCTTGCGCTAATAACTATGGAGCAATCAGCATGCTTTTTTTTCAAATATTTTTTTGTAGACTTTCAAAATTGATAACGATTTCATTGTACTACGAACGATGCACTGTTTCTTTCTAAATACACATGGATATCCAAGCCACCGGATGGGTGGCCATTATGCCTTTGCTATTACGAGAGCATCTGTTGCGTTTTATGATATCCGATAAAATTCGAACTCTTGTCAAATTGTCGAGGGCTCTATGGTTATTGCTTCGATATGAAATGCAGGACACAACGAGGATACAGTCTTGCATCATATTCTCTGTGACGCATTACAAGAAATCAGAATGTGAATAAACAGGAAATAATTCTTAATAAC

Ace file of the UniGene sp_v2.0_unigene10133 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	BTB/POZ and M4 domain-containing protein [Arabidopsis thaliana] sp\|Q9SRV1.1\|BPM4_ARATH RecName: Full=BTB/POZ and MATH domain-containing protein 4; AltName: Full=Protein BTB-POZ AND MATH DOMAIN 4; Short=AtBPM4 gb\|AAF00643.1\|AC009540_20 unknown protein [Ara	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	speckle-type poz protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	77%
Blast2go	cellular response to salt stress	GO:0071472	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3	MATH	IPR002083	-	-
Sma3	TRAF-type	IPR013322	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMS2

Fln msg:

Fln protein: MRRALNSLQEQLAEAVYGTGMYGRNPTNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFSVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGKGRHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND*

Protein Length: 393

Fln nts: ATGGGGGCTACACATGCAAATTAGGCTCAGTCCTCGTCAAGCCCCATCTGACCGACTCTCTAACGTACCTACTTAAATACCGTCGTGACCTTGGCTGTCACTCAACTTGATTTGCATTTTCTTGGTTCGAGTCTACTGTTCGAATCGCGGGAACGGATAAACCAGTGGATCGCAGAAAAAATTGAGAAAATTTAAGGCTCCTTGAGTTTTCGACGGTCAAGAACAATTAATTGACAGGAGGTGTTGTCGCA_-_ATGAGGAGAGCTTTAAATTCCCTCCAAGAACAGCTCGCAGAAGCTGTCTACGGCACGGGAATGTACGGCAGGAATCCCACAAACACGGAATCCCGTTATGTGGCAGACACCGTAAAAGGATCCCACGATTTAACCATCGTGGGATTTTCTCTGGCCAAGGGCATGGGTGTCGGTAATTTCCTTGCGAGCGAGACTTTCAGCGTCGGAGGATACGACTGGGCCATTTACTTTTACCCCGACGGAAAAAACCCTGAAGACAATTCTCTGTATGTTTCGGTTTTCGTGGCTTTGGTCAGCGAGGGCACTGATGTGAGGGCTAAGTTTGAATTGAGGCTGATTGACCAGAGCGGCAAGGGGAGGCACAAAGTTCATAGCCATTTTGAACGCAGCCTTGAACGCGGGCCTTACACTTTGAAATACCACGGAAGCATGTGGGGTTACAAACGTTTCTACAGGCGAGCTCAGTTGGAAGTATCAGATTTTGTAAAGGATGATACTCTGAAAATATGTTGCACAGTTGGGGTTGTGGTTTCTGCTATTCACGGCCCTACATTGCACTATATTCATATTCCTGAATCAAACTTGGGCCAACAATTTGGGGCACTTCTTGAAGATGTGGAAAATGCAGATGTCACATTTGATGTATCAGGGGAAAAATTTCATGCTCACAAAGTGGTTCTGGCAGCACGTTCACCTGTATTTAAATCCATGTTTTTTGGGCCCACCCAGGATGATTGGAATGACAAAGAAATTAGCATTGAAGATACAAGGCCAGAGGTGTTTAAGGCTATGTTGCACTTTATTTACAAAGATACCCTTCCAGATTTAGAGGAGCATGGAGATTTAGAAGAGCTTTCTGATCCATCCCCTTGCTTTTTGACACCTGAGACAATGATCGAACATTTGCTTACAGCAGCAGATCGATATGGTCTGCGTCAGTTAAGGTGGTTGTGTGAGTCGAGAATATCACAGGGAATAAGTGTGAACACTGTTGCCAAAATACTTGAACTGGCCCAGCGATATCAGGCTTCTCAACTCAAATCTGCATGCCTTAAATTTGCTGCCACAAACTTGGAAGACGTCATGAAGTCAGAGGGATTTGAATACTTGAAGGAGAATTGCCCCTCTCTTCAGTTGGAGCTTCTACAAACTGTTGCACAATTCAAGAACGATTGA___AACATAAAGAGAAAAGCTGGAGTGCACCAAGTCATGAATCAAATGCCTCTGACAGCAACATATAAGGACACGACAAACTTAGTGATACAATCTACAGTGAGAAATCTGAAAATTCTGATTAGTTGAATGACACTAATTTTGAGGTATTTCTGGCTTTGGGGAGAAATTAACCAAGATGTCCCTGAAGCAGAAATGAAAGATTTTTTCCACTCTGGAAATCCTTGAGGTGACGACTTTGTAAGATGCATCCCAGCTTGCGCTAATAACTATGGAGCAATCAGCATGCTTTTTTTTCAAATATTTTTTTGTAGACTTTCAAAATTGATAACGATTTCATTGTACTACGAACGATGCACTGTTTCTTTCTAAATACACATGGATATCCAAGCCACCGGATGGGTGGCCATTATGCCTTTGCTATTACGAGAGCATCTGTTGCGTTTTATGATATCCGATAAAATTCGAACTCTTGTCAAATTGTCGAGGGCTCTATGGTTATTGCTTCGATATGAAATGCAGGACACAACGAGGATACAGTCTTGCATCATATTCTCTGTGACGCATTACAAGAAATCAGAATGTGAATAAACAGGAAATAATTCTTAATAAC

Fln Alignment:

Contig10133___MRRALNSLQEQLAEAVYGTGMYGRNPTNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFSVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGKGRHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLEVSDFVKDDTLKICCTVGVVVSAIHGPTLHYIHIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHKVVLAARSPVFKSMFFGPTQDDWNDKEISIEDTRPEVFKAMLHFIYKDTLPDLEEHGDLEELSDPSPCFLTPETMIEHLLTAADRYGLRQLRWLCESRISQGISVNTVAKILELAQRYQASQLKSACLKFAATNLEDVMKSEGFEYLKENCPSLQLELLQTVAQFKND
B8LMS2_______________MKRALNSLQEQLAEAVYGTGINGRNPSNTESRYVADTVKGSHDLTIVGFSLAKGMGVGNFLASETFNVGGYDWAIYFYPDGKNPEDNSLYVSVFVALVSEGTDVRAKFELRLIDQSGRGKHKVHSHFERSLERGPYTLKYHGSMWGYKRFYRRAQLESSDFVKDDTLKICCTVGVVVSAIHGPRLHYIRIPESNLGQQFGALLEDVENADVTFDVSGEKFHAHRVVLAARSPVFKSMFFG-SSEEWNDKEISIEGTKPEVFKAMLHFIYRDTLPDLEEHADLEELSDPSPCFLTPETMIEYLLTAADRYGLRQLRWLCESRISQGITVSTVAKILELAQRYQASQLKSACLKFAASNLEEVMKSEGFEYLKENCPSLQLELLQTVAQFKDD

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
928	84		15		0.999986
1061		10		90	0.90298
1062		11	88		0.923564
1063		11	88		0.923564
1064	11		88		0.923564
1084			14	85	0.993533
1086			14	85	0.993533
1088	85	14			0.993533
1090			14	85	0.993533
1091	85	14			0.993533
1097		14	85		0.993533
1105	16			83	0.994512
1231	11		88		0.923564
1562		16		83	0.994512
1563	83		16		0.994512
1626		20		80	0.995493
1647		75		25	0.996473
1648		75	25		0.996473
1650		75	25		0.996473
1653		25		75	0.996473
1654	25		75		0.996473
1656		25		75	0.996473
1657		25		75	0.996473
1660	75		25		0.996473
1663	25		75		0.996473
1664		25		75	0.996473
1666		25	75		0.996473
1918	71		28		1.0
1936			20	80	0.995493
1937		20	80		0.995493
1938	80	20			0.995493
1940		20		80	0.995493
1941		20	80		0.995493
1942	80		20		0.995493
1943		80	20		0.995493
1945	20		80		0.995493
1947		80		20	0.995493
1948	80			20	0.995493
1949	80	20			0.995493
1951			80	20	0.995493
1953		80		20	0.995493
1955	20	80			0.995493
1956			80	20	0.995493
1957	80			20	0.995493
1958		80	20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain