SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10095

Length: 1849 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10095

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative CTP synthetase [Oryza sativa Japonica Group]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ctp synthase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	CTP synthase.	EC:6.3.4.2	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pyrimidine metabolism	00240		0.0	85%
Blast2go	Metabolic pathways	01100		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	85%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	85%
Blast2go	pyrimidine nucleotide biosynthetic process	GO:0006221	Biological Process	85%
Blast2go	CTP synthase activity	GO:0003883	Molecular Function	85%
Blast2go	endomembrane system	GO:0012505	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3		IPR000991	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	CTP synthase	IPR004468	-	-
Sma3	CTP synthase, N-terminal	IPR017456	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK6

Fln msg: Unexpected stop codon in the beginning of your sequence,

Fln protein: S*PWLSLNITDAIRDWIIAVAQIPVDGKEGPADVCVIELGGTVGDIESMPFIESLRQLSYSVGPENFCLVHVSLVPVIGVVGEQKTKPTQHSVRELRALGLTPHLLVCRSSQPLLENTKEKLSQFCHVPESNILNIYDVSNIWHVPLLLRDQKAHEAIMKQLNILSFSKTPDLEEWTVRAVCSDNLTTPIKIAMVGKYTGLSDSYLSVLKALLHACVACSLKLSVEWVAASDLEDEAAKERPDVHASAWKVLKGAAGVLVPGGFGDRGVQGKILAAKYARENRIPYLGICLGMQIAVIEFARSVLGLEGANSAEFDPKTQHPCVIFMPEGSKTYMGSTMRLGSRKTFFRTADCVTAKLYGNVSSVDERHRHRYEVNPIMVEDLEKAGLMFVGRDESGNRMEIIGVSWPSLLCWSSISPRIQNHDQANHLQFS*

Protein Length: 434

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTACAGATGCCATTCGAGATTGGATTATAGCTGTAGCACAAATTCCTGTTGATGGGAAAGAAGGCCCAGCAGATGTCTGCGTCATTGAGTTGGGTGGAACAGTTGGGGATATTGAATCAATGCCATTCATTGAGTCTTTGCGTCAACTGTCATATTCTGTTGGGCCAGAAAACTTTTGCCTGGTCCATGTAAGCCTTGTACCTGTTATAGGTGTTGTTGGAGAGCAGAAAACCAAACCAACACAGCATAGTGTTCGGGAACTAAGAGCATTGGGTTTGACACCTCATCTGCTAGTTTGTCGAAGTTCTCAGCCCTTACTAGAGAATACTAAGGAGAAGCTGTCTCAGTTTTGTCATGTTCCGGAAAGCAACATTCTTAATATTTATGATGTGTCAAACATTTGGCATGTCCCTTTATTGCTAAGGGATCAAAAGGCACATGAGGCAATAATGAAACAATTGAATATATTAAGTTTTTCTAAAACCCCGGATTTAGAGGAGTGGACCGTGAGAGCAGTGTGCTCTGATAACCTTACGACTCCTATAAAAATTGCCATGGTTGGAAAATATACTGGGTTGTCAGATTCTTACCTTTCTGTATTGAAGGCTCTTTTACATGCTTGTGTTGCATGTTCATTGAAATTGTCTGTAGAATGGGTTGCAGCTTCCGATCTTGAAGATGAAGCTGCAAAAGAGAGACCAGACGTTCATGCTTCTGCATGGAAGGTTCTGAAGGGTGCAGCTGGTGTTCTGGTCCCAGGGGGATTTGGTGATCGAGGTGTGCAAGGAAAAATACTGGCAGCAAAATATGCACGCGAAAATCGAATACCCTATCTTGGCATTTGCTTGGGGATGCAGATTGCTGTCATTGAATTTGCACGTTCTGTTCTTGGTTTGGAGGGTGCCAATAGTGCAGAATTTGACCCAAAAACTCAACATCCTTGTGTCATTTTCATGCCGGAGGGGTCAAAGACCTATATGGGGAGTACAATGCGGCTCGGTTCAAGGAAAACATTTTTTCGAACTGCTGATTGTGTTACTGCAAAGCTATATGGAAATGTTTCTTCTGTGGACGAGAGACATCGGCATAGATATGAGGTCAATCCTATCATGGTAGAAGACCTAGAAAAGGCTGGGCTTATGTTTGTGGGGAGGGATGAAAGTGGTAATCGGATGGAGATAATTGGAGTTAGTTGGCCATCCCTTCTATGTTGGAGTTCAATTTCACCCAGAATTCAAAATCACGACCAGGCAAACCATCTGCAGTTTTCTTAG___GTCTCATCTTAGCTGCATCAGGCCAGTTAGATTCATACCTAAATAATGTTGGAGTACAGAATGCAACAGCCCCGAGTCCCACATAAAAATATATAGAGCTTGGACAAAGTAATAATAGCAATAAATTGGGACAGTATGAAAGGTCCTATTACTGGCACTCAAAGGAGAAACACATCCCTAAAGTGACTCGTGAGTGGCATTGTCCTTGTCTAAACAAGCAGATGTCAAAGAGGAACTGGAAGCTGAGGTGAATTTGTTAATATCTTCGGCATCTTTGTAATTTTTTTGATGCAATATATGTTTGTGTGTGTGTTCTCACTTTTATTACAGACTGGCACTGAGTGCCACATTCTTGAATAAACTGGAAGAGATAAAAATAGCTTGAGAATAGGTTCTACAAAAGACAGTAGTGAAGTTCCGGTCATGTTAAGTGGAAATAGATTGCGTCATTGTTTTATATGCATGTTCTACATGAATGTTATCCAATTTTTTTTGACAATATCTGTTAATGCCAAATAAAAACTTGCGTGATCTAGGTAGCGCTTCGC

Fln Alignment:

Contig10095___NITDAIRDWIIAVAQIPVDGKEGPADVCVIELGGTVGDIESMPFIESLRQLSYSVGPENFCLVHVSLVPVIGVVGEQKTKPTQHSVRELRALGLTPHLLVCRSSQPLLENTKEKLSQFCHVPESNILNIYDVSNIWHVPLLLRDQKAHEAIMKQLNILSFSKTPDLEEWTVRAVCSDNLTTPIKIAMVGKYTGLSDSYLSVLKALLHACVACSLKLSVEWVAASDLEDEAAKERPDVHASAWKVLKGAAGVLVPGGFGDRGVQGKILAAKYARENRIPYLGICLGMQIAVIEFARSVLGLEGANSAEFDPKTQHPCVIFMPEGSKTYM
B8LLK6_______________HITDAIQDWIIDVAGIPVDGKEGPADVCVIELGGTVGDIESMPFIESLRQLSYSVGPENFCLVHVSLVPVIGVVGEQKTKPTQHSVRELRALGLTPHLLVCRSSQPLLENTKEKLSQFCHVPERNILNIYDVSNIWHVPLLLRDQKAHEAILKQLNILSISKAPDLEEWTARAVCYDNLTTPIKIAMVGKYTGLSDSYLSVLKALLHACVACSLKLSVEWVAASDLEDEAAKERPDVYASAWKVLKGAAGVLVPGGFGDRGVQGKILAAKYARENRIPYLGICLGMQIAVIEFARSVLGLEGANSAEFDPETPHPCVIFMPEIRKCFL

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
22	25			75	0.996473
23		75		25	0.996473
24	75		25		0.996473
25	75		25		0.996473
26			25	75	0.996473
40	20			80	0.995493
44	80			20	0.995493
393	80			20	0.995493
397	80			20	0.995493
400		20		80	0.995493
404	20			80	0.995493
500	16			83	0.994512
502	83		16		0.994512
503	83			16	0.994512
649		10		90	0.90298
657		15		85	1.0
663		15	85		1.0
665		15		85	1.0
666	15	85			1.0
926		14		85	0.993533
1026	25		75		0.996473
1032		25	75		0.996473
1033	25			75	0.996473
1036	75	25			0.996473
1227			87	12	0.999964
1269	88	11			0.999952
1270	88		11		0.999952
1273	87		12		0.999964
1274		87		12	0.999964
1280	84	5		10	0.999846
1284	84			5	0.999846
1285	84		5	10	0.999846
1286	89		10		0.999919
1287		89		10	0.999919
1290			5	84	0.999846
1293	5	10	84		0.999846
1294	10	89			0.999919
1394	88			11	0.923564
1395	11			88	0.923564
1793	20			80	0.999996
1801			87	12	0.992554
1803		85	14		0.993533
1805	83	16			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain