SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10094

Length: 2252 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene10094
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATATTTCTGGTCGCAGAAGCAAGGTGCCGCTGCGGAAGGGAGCCGGGAAAAAATGGCGGAGGATTTGGAGGAAGCGGCTGGTCCATATGTTGGCCTCTCTGATGATATTAACAAAACGCCTGGTGTTCACTGTAACAGGATTTATAGGAATTCAATACTTTGTGCTTTTCTGATTGCAGTTGCCCTTTGCGGGAAGGCGATATTCAGGAAGCCAAACGATGGCGAAAGGGCAGAAGGGCCGGTGGTTGAGTATGTTATTTCGAGGGGTCGTGTCGAAGGCGTTTCGGAGAAGAGCGTGGGGGTTTCGTTTTGGACTTATCCGTGGACGATCGCGGAGCTCTCGTGGCAAAGAACGGGGTTTCATTTCCAGACCGAGGCGAATTGGATGAACGATCCAAATGGGCCGCTGGTGTACAAGGGATGGTATCATCTGTTCTATCAATACAATCCAGTCTCGGCTGTATGGGGGAACATAGCATGGGGTCACGCTGTGTCGAAGGATCTGGTGCACTGGTTCTACCTTGACGTGGCTATGAGTCCCGACCGCTGGTACGACATCAACGGCGTCTGGACGGGTTCTGCTACGTTCTTGGCAAACGAAACCCTGGTCATGCTTTACACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCATTTCCGGAGGACCCATCCGACCCGCTTCTGCGAAAATGGGTGAAGTCGGAGGCTAATCCCGTTCTAGTCCCGCCTAAGGGGGTCGGGTCCAAGGATTTCAGGGATCCGACTACGGGCTGGATCGGCAAAGACGGGATTTGGCGGATCGCGATCGGATCAAAGCTCGGTATGACAGGCGTGACGCTAGTGTTCAAGACGAAGGACTTCATCGAGTACGAGCAGGAGAACATTTTGCATTCCGTCAACGGCACGGGCATGTGGGAATGCGTGGATTTCTTTCCCGTGGCCGTCTCCGGAATTAAGGGTTTGGACACTTCTGCGAACGGGGTGGGCGTGAAACATGTGCTCAAGGCCAGTTTCGATGACGACAAGAACGATTATTATGCGATTGGAACCTACGACCTTGAGAAACAGAGGTTTATCCCTGATGATCCTGCTGTGGACGTCGGGCTCGGTCTACGGCTTGATTATGGAAAATATTATGCTTCCAAGTCTTTCTATGATCCGCTGAAGCAGAGAAGAATTCTGTGGGGATGGGTAGGAGAAACCGACAGCGAACAAGACGATCTAAGAAAAGGCTGGGCTTCCTTGCAGACAGTTCCCAGAGCTGTTTGGTTTGATGACAAGACGAAGGCAAATATCATCCAATGGCCGATTGAAGAAATCGACGAACTGCGGTCGGTTGAGCTTGTCGTCGAGAACGAGTTGCTTCGGCCGGGTTCTGTGGTGGAAGTCGGTGCAACAGACTGTGCTCAGTTGGATATTGAGCTCGTTTTTGAATTCCCGGACGCCGCTGCCATTGAAGCGGTCGAAGGCGACTCAGTCTACAGCTGCAGCAATGGTGGAGGAGCTGCTGGTAGAGGCAGATTGGGACCTTTTGGGTTGCTGGTCTTAGCCGAGAAAAATCTGACGGAACAGACGGCCGTCTATTTCTACGTTGCGAAATCTGCCGACGGCCAATTGCAGACCTTTTTATGCCATGACGAAACCAGATCCTCGCTAGCATCTGAACTCATACTGGGGATCCATGGGAGCTCTGTCCCAGTTCTGGCAGACGAAAAGAGCATCTCGGTTCGAACCCTGGTTGACCATTCGATTGTGGAGAGCTATGCGCAAGGGGGAAGACGGTGCATAACGTCTAGGGTATATCCGACACGGTCACTAAATGGAGCTGCCAAACTGTTTCTGTTCAACAACGCCACCGCAGCTGTAAAAGTTCAGACTTTGAATGTCTGGCATATGGATGGTGTGTCTATGCAACCCTACCAACAACTAAGTCGATAGATTAATTTTGACGGGCCTTATGTTGGTTGATATGTGATTGTTTGTCATGCGATCCAGTCCTGAAAATGTATTTTACCATTTGTATAATGATGTAAAAGTCTTGGCCATAGTCTAACCAGAATGTATTTTTTGCCAAGGTTATGGAATTCTAGCCATATTTTCAAAAAATTGGTAGGAATTTTTGTAAACCTACCTTAAAACTGTTAAATTTCAAGGTTTTAAGGGATGATGTTAAATCTATTTCCACCATCAAATATAATAAA

Ace file of the UniGene sp_v2.0_unigene10094 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-fructofuranosidase, soluble isoenzyme I n=1 Tax=Daucus carota RepID=INVB_DAUCA	-	-	58%
FL-Next	sp=Beta-fructofuranosidase, soluble isoenzyme I; Daucus carota (Carrot).	-	-	60%
Blast2go	vacuolar invertase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	75%
Blast2go	Starch and sucrose metabolism	00500	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	75%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P80065

Fln msg: No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 631 - 661

Fln protein: MAEDLEEAAGPYVGLSDDINKTPGVHCNRIYRNSILCAFLIAVALCGKAIFRKPNDGERAEGPVVEYVISRGRVEGVSEKSVGVSFWTYPWTIAELSWQRTGFHFQTEANWMNDPNGPLVYKGWYHLFYQYNPVSAVWGNIAWGHAVSKDLVHWFYLDVAMSPDRWYDINGVWTGSATFLANETLVMLYTGSTNESVQVQNLAFPEDPSDPLLRKWVKSEANPVLVPPKGVGSKDFRDPTTGWIGKDGIWRIAIGSKLGMTGVTLVFKTKDFIEYEQENILHSVNGTGMWECVDFFPVAVSGIKGLDTSANGVGVKHVLKASFDDDKNDYYAIGTYDLEKQRFIPDDPAVDVGLGLRLDYGKYYASKSFYDPLKQRRILWGWVGETDSEQDDLRKGWASLQTVPRAVWFDDKTKANIIQWPIEEIDELRSVELVVENELLRPGSVVEVGATDCAQLDIELVFEFPDAAAIEAVEGDSVYSCSNGGGAAGRGRLGPFGLLVLAEKNLTEQTAVYFYVAKSADGQLQTFLCHDETRSSLASELILGIHGSSVPVLADEKSISVRTLVDHSIVESYAQGGRRCITSRVYPTRSLNGAAKLFLFNNATAAVKVQTLNVWHMDGVSMQPYQQLSR*

Protein Length: 632

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATATTTCTGGTCGCAGAAGCAAGGTGCCGCTGCGGAAGGGAGCCGGGAAAAAATGGCGGAGGATTTGGAGGAAGCGGCTGGTCCATATGTTGGCCTCTCTGATGATATTAACAAAACGCCTGGTGTTCACTGTAACAGGATTTATAGGAATTCAATACTTTGTGCTTTTCTGATTGCAGTTGCCCTTTGCGGGAAGGCGATATTCAGGAAGCCAAACGATGGCGAAAGGGCAGAAGGGCCGGTGGTTGAGTATGTTATTTCGAGGGGTCGTGTCGAAGGCGTTTCGGAGAAGAGCGTGGGGGTTTCGTTTTGGACTTATCCGTGGACGATCGCGGAGCTCTCGTGGCAAAGAACGGGGTTTCATTTCCAGACCGAGGCGAATTGGATGAACGATCCAAATGGGCCGCTGGTGTACAAGGGATGGTATCATCTGTTCTATCAATACAATCCAGTCTCGGCTGTATGGGGGAACATAGCATGGGGTCACGCTGTGTCGAAGGATCTGGTGCACTGGTTCTACCTTGACGTGGCTATGAGTCCCGACCGCTGGTACGACATCAACGGCGTCTGGACGGGTTCTGCTACGTTCTTGGCAAACGAAACCCTGGTCATGCTTTACACGGGATCCACGAACGAATCCGTTCAAGTCCAGAACTTGGCATTTCCGGAGGACCCATCCGACCCGCTTCTGCGAAAATGGGTGAAGTCGGAGGCTAATCCCGTTCTAGTCCCGCCTAAGGGGGTCGGGTCCAAGGATTTCAGGGATCCGACTACGGGCTGGATCGGCAAAGACGGGATTTGGCGGATCGCGATCGGATCAAAGCTCGGTATGACAGGCGTGACGCTAGTGTTCAAGACGAAGGACTTCATCGAGTACGAGCAGGAGAACATTTTGCATTCCGTCAACGGCACGGGCATGTGGGAATGCGTGGATTTCTTTCCCGTGGCCGTCTCCGGAATTAAGGGTTTGGACACTTCTGCGAACGGGGTGGGCGTGAAACATGTGCTCAAGGCCAGTTTCGATGACGACAAGAACGATTATTATGCGATTGGAACCTACGACCTTGAGAAACAGAGGTTTATCCCTGATGATCCTGCTGTGGACGTCGGGCTCGGTCTACGGCTTGATTATGGAAAATATTATGCTTCCAAGTCTTTCTATGATCCGCTGAAGCAGAGAAGAATTCTGTGGGGATGGGTAGGAGAAACCGACAGCGAACAAGACGATCTAAGAAAAGGCTGGGCTTCCTTGCAGACAGTTCCCAGAGCTGTTTGGTTTGATGACAAGACGAAGGCAAATATCATCCAATGGCCGATTGAAGAAATCGACGAACTGCGGTCGGTTGAGCTTGTCGTCGAGAACGAGTTGCTTCGGCCGGGTTCTGTGGTGGAAGTCGGTGCAACAGACTGTGCTCAGTTGGATATTGAGCTCGTTTTTGAATTCCCGGACGCCGCTGCCATTGAAGCGGTCGAAGGCGACTCAGTCTACAGCTGCAGCAATGGTGGAGGAGCTGCTGGTAGAGGCAGATTGGGACCTTTTGGGTTGCTGGTCTTAGCCGAGAAAAATCTGACGGAACAGACGGCCGTCTATTTCTACGTTGCGAAATCTGCCGACGGCCAATTGCAGACCTTTTTATGCCATGACGAAACCAGATCCTCGCTAGCATCTGAACTCATACTGGGGATCCATGGGAGCTCTGTCCCAGTTCTGGCAGACGAAAAGAGCATCTCGGTTCGAACCCTGGTTGACCATTCGATTGTGGAGAGCTATGCGCAAGGGGGAAGACGGTGCATAACGTCTAGGGTATATCCGACACGGTCACTAAATGGAGCTGCCAAACTGTTTCTGTTCAACAACGCCACCGCAGCTGTAAAAGTTCAGACTTTGAATGTCTGGCATATGGATGGTGTGTCTATGCAACCCTACCAACAACTAAGTCGATAG___ATTAATTTTGACGGGCCTTATGTTGGTTGATATGTGATTGTTTGTCATGCGATCCAGTCCTGAAAATGTATTTTACCATTTGTATAATGATGTAAAAGTCTTGGCCATAGTCTAACCAGAATGTATTTTTTGCCAAGGTTATGGAATTCTAGCCATATTTTCAAAAAATTGGTAGGAATTTTTGTAAACCTACCTTAAAACTGTTAAATTTCAAGGTTTTAAGGGATGATGTTAAATCTATTTCCACCATCAAATATAATAAA

Fln Alignment:

Contig10094___TYPWTIAELSWQRTGFHFQTEANWMNDPNGPLVYKGWYHLFYQYNPVSAVWGNIAWGHAVSKDLVHWFYLDVAMSPDRWYDINGVWTGSATFLANETLVMLYTGSTNESVQVQNLAFPEDPSDPLLRKWVKSEANPVLVPPKGVGSKDFRDPTTGWIGKDGIWRIAIGSKLGMTGVTLVFKTKDFIEYE-QENILHSVNGTGMWECVDFFPVAVSGIKGLDTSANGVGVKHVLKASFDDDKNDYYAIGTYDLEKQRFIPDDPAVDVGLGLRLDYGKYYASKSFYDPLKQRRILWGWVGETDSEQDDLRKGWASLQTVPRAVWFDDKTKANIIQWPIEEIDELRSVELVVENELLRPGSVVEVGATDCAQLDIELVFEFPDAAAIEAVEGDSVYSCSNXXXXXXXXXXXXXXXXXLAEKNLTEQTAVYFYVAKSADGQLQTFLCHDETRSSLASELILGIHGSSVPVLADEKSISVRTLVDHSIVESYAQGGRRCITSRVYPTRSLNGAAKLFLFNNATAAVKVQTLNVWHMDGVSMQPY
P80065_______________SYPWTNDMLSWQRTSFHFQPQENWMNDPNGPLFHMGWYHLFYQYNPDSAIWGNITWGHAISRDLINWLHLPFAMQPDQWYDINGVWTGSATVLPDGKIVMLYTGDTDDLVQVQNLAYPANLSDPLLLDWIKYPDNPVMFPPPGIGSTDFRDPTTAWIGRDGKWRITIGSKVNKTGISLMYKTTDFITYELLDNLLHAVPGTGMWECVDFYPVSVTGSNGLDTSVNGPGVKHVLKSSLDDDRHDYYALGTYDPINDKWTPDNPELDVGIGLRLDYGKYYASKTFYDQDKERRLLWGWIGETDSESADLLKGWASVQSIPRTVVFDKKTGTNILQWPVKEVESLRSRSYEIDDVELKPGSLVPLKISSAAQLDIVASFEVDEEAFKGTYEADASYNCTASEGAAGRGILGPFGILVLADDPLSELTPVYFYIAKGVDGNAKTYFCADQSRSSTASDVDKEVYGSDVPVLHGE-SLSMRLLVDHSIVESFAQGGRTVITSRVYPTRAIYSAARVFLFNNATGVSVTASVKAWQMASATLKPF

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
538			9	90	0.999842
549		82		17	1.0
583	11			88	0.999952
586	88	11			0.999952
588	11			88	0.999952
589			11	88	0.999952
591			88	11	0.999952
595	11			88	0.999952
694		10	90		0.90298
695		90	10		0.90298
701	11	88			0.923564
704		88		11	0.923564
705	88		11		0.923564
709			10	90	0.90298
713	10			90	0.90298
1119	87			12	0.992554
1281	33		66		0.997452
1540		11		88	0.923564
1543	11		88		0.923564
1544			88	11	0.923564
1628		90		10	0.90298
1630		10	90		0.90298
1632	90		10		0.90298
1635		90	10		0.90298
1639	10	90			0.90298
1640	90	10			0.90298
1703		87		12	0.992554
1740		71		14	0.984337
1865	85		14		0.993533
2197		16	83		0.994512
2198	83	16			0.994512
2201	83	16			0.994512
2202		16	66	16	0.988813
2203	80	20			0.995493
2206	20			60	0.99255
2211		25		75	0.996473
2212		25	75		0.996473
2214		25	75		0.996473
2216			75	25	0.996473
2218	25	75			0.996473
2220			75	25	0.996473
2225	66	33			0.997452
2226			66	33	0.997452
2227	33		66		0.997452
2229		66		33	0.997452
2230	66			33	0.997452
2231		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain