SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10065

Length: 1249 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10065

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ 8, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RGM8_RICCO	-	-	2.0e-18	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	chaperone protein dnaj chloroplast	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	67%
Blast2go	response to stress	GO:0006950	Biological Process	67%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	67%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	67%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC87

Fln msg:

Fln protein: MAASVCRFVGAKGNSFLERKSGDRKNLGGRRKVTVMASQAFPGMKEQYETLRLSPGVSEKDVKRAYRRLALQYHPDVCKGDNCGVQFQKINQAYETLMSSLARAKQQTYSADYYVEGMMGINNDSWDEWEEWMGWEGAGTLDYSSHINIYA*

Protein Length: 153

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATCTGTATTCTTTTCCTGTGATTTGATAACCACATTAAGGGCAATCTCTGCTATTTGTTTTGGTCTAGTAACTGGATTTCGGTGCACCCATTTGGGGTTCCAGAGGATAAGATCAGTTTCGCAGTTGTGCTTCAAGATCGGTTTGTTGGTCAGCGGTTTCTTTTGTCAGATAAGATCAGTTTTGCAGTTGGGCTTCAAGCTCGGTTTGTTGGTCAGCCGTTTCTTTTGTCAGAAATC_-_ATGGCTGCCTCTGTTTGCAGGTTTGTGGGAGCCAAGGGGAATTCCTTCTTAGAAAGAAAAAGTGGAGATAGGAAGAATTTGGGAGGCAGGAGGAAGGTAACTGTGATGGCCTCTCAAGCTTTTCCTGGGATGAAAGAGCAGTATGAGACTCTGAGATTAAGCCCTGGGGTTTCTGAAAAAGATGTGAAGAGAGCCTACCGTCGCCTTGCTTTGCAGTATCATCCGGATGTTTGCAAAGGAGATAACTGTGGGGTTCAATTTCAGAAGATCAATCAGGCTTATGAGACTTTAATGTCCAGTTTAGCAAGGGCAAAACAGCAAACCTATTCTGCTGATTACTATGTGGAGGGCATGATGGGAATCAATAACGATTCTTGGGATGAGTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGACTATTCCTCTCATATTAACATTTATGCATGA___TGAAATCATCATCATAAACTTCATAGGTGTCTGTTGGGCGGCCTTGCAAATAGTAATGACCTCTCCATGACCTATCCCTTGTTGACTGTTGTGGGCTATCTATGAAGTTCTTGCTATTGGCAGCAAAACATCTGTCTTAGAAACCCAATAAAGCTTCTTCATTCATCTCCTGGAAATACAATATGCTCTTCTACCTGTATAGTTGATTTGATTTCTCTGGAGTTGGCTCCCACAACACTAAGGGATTATTGATCCAGATGAAGCAACAACCTTTTGAGCTGGCTCTGTTTTAGTGAGTCATTTGATTTGCTCATGGATCCTGATTGTTTGACTACTTGAACATATGCTCTGTCCATTTAATCTCTCAACTACTTGTACATAGCTGTGGGATATCTCTCTGGACCATGTGATTATTATGGTGATCTGCTCTTCAATAAAGAGCTCCCAACTCTTCTTCCTCTAATTTGTAATGACATTCATTTAATGGAAACCATTATTTTGGATAAGATCTTTGATCATTGAGACGAAAT

Fln Alignment:

Contig10065___MAASVCRFVGAKGNSFLERKSGDRKNLGGRRKVTVMASQAFPGMKEQYETLRLSPGVSEKDVKRAYRRLALQYHPDVCKGDNCGVQFQKINQAYETLMSSLARAKQQTYSADYYVEGMMGINNDSXXXXXXXXXXXXXXTLDYSS
D5AC87_______________MAASVRILVGANGNSFLERKSGKKKNFGGRRNATVMASVAFPGMKEEYKTLRLSPGAAEKDIKKAYRRLALQYHPDVCKGDNCGVQFQRINQAYETVMSSLAKAKQQSCSADYYVEGMVGVNNDSWDEWEEWMGWEGAGTLDYSS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
162	12		87		0.992554
178	12		87		0.992554
406	83			16	0.994512
407		16		83	0.994512
409	83	16			0.994512
473			33	66	1.0
741		33		66	1.0
771	57	42			1.0
774	57	42			1.0
775	57		42		1.0
784		57	42		1.0
785		57	42		1.0
786	57	42			1.0
789	57			42	1.0
790		85		14	0.993533
792	14			57	1.0
793	85	14			0.993533
794		28		71	1.0
795		71		28	1.0
796	14	85			0.993533
797	25	75			1.0
798			12	87	0.992554
800		12	87		0.992554
801			12	87	0.992554
811		12		87	0.992554
812			87	12	0.992554
814			87	12	0.992554
821	87	12			0.992554
822	12			87	0.992554
872	12		87		0.992554
893	78	7			0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain