SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10050

Length: 785 nt

Origin of reads: Inia v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10050

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1431 multi-domain protein	-	-	4.0e-05	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	uncharacterized protein	-	-	2.80566e-11	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	2.80566e-11	76%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	2.80566e-11	76%
Blast2go	Methane metabolism	00680	2.80566e-11	76%
Blast2go	Phenylpropanoid biosynthesis	00940	2.80566e-11	76%
Blast2go	Biosynthesis of phenylpropanoids	01061	2.80566e-11	76%
Blast2go	Metabolic pathways	01100	2.80566e-11	76%
Blast2go	Biosynthesis of secondary metabolites	01110	2.80566e-11	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	2.80566e-11	76%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	2.80566e-11	76%
Blast2go	heme binding	GO:0020037	Molecular Function	2.80566e-11	76%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	2.80566e-11	76%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	2.80566e-11	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.80566e-11	76%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
181		20	80		0.995493
183	20			80	0.995493
184	20		80		0.995493
192	80		20		0.995493
195		80	20		0.995493
196	20			80	0.995493
216		50		50	1.0
219	16		83		0.994512
321		15		84	0.999986
428	90			10	0.90298
429	90	10			0.90298
431	90	10			0.90298
433	90	10			0.90298
434	10	90			0.90298
450	90			10	0.90298
452		10	90		0.90298
453	90			10	0.90298
454		10	90		0.90298
455	10		90		0.90298
575	70	30			1.0
655			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain