SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10021

Length: 886 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10021

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DHFS-FPGS homolog C [Arabidopsis thaliana] gb\|AEE74866.1\| DHFS-FPGS homolog C [Arabidopsis thaliana]	-	-	2.0e-37	50%
FL-Next	tr=At3g10160; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Blast2go	folylpolyglutamate synthase	-	-	9.57087e-43	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tetrahydrofolate synthase.	EC:6.3.2.17	-	9.57087e-43	63%

Source	KEGGs	Term	e value	Identity
Blast2go	Folate biosynthesis	00790	9.57087e-43	63%
Blast2go	Biosynthesis of phenylpropanoids	01061	9.57087e-43	63%
Blast2go	Metabolic pathways	01100	9.57087e-43	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	9.57087e-43	63%
Blast2go	tetrahydrofolylpolyglutamate synthase activity	GO:0004326	Molecular Function	9.57087e-43	63%
Blast2go	mitochondrial matrix	GO:0005759	Cellular Component	9.57087e-43	63%

Source	InterPros	Term	Type	Identity
Sma3	Folylpolyglutamate synthetase	IPR001645	-	-
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Exostosin-like	IPR004263	-	-
Sma3	Mur ligase, central	IPR013221	-	-
Sma3	Folylpolyglutamate synthetase, conserved site	IPR018109	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
182	33			66	0.997452
185	66			33	0.997452
186		66		33	0.997452
226	20			80	0.995493
227	20			80	0.995493
303	14		85		0.993533
317	80		20		0.995493
318	80		20		0.995493
319	80		20		0.995493
398		22		77	0.999999
401	11		88		0.923564
403		22	77		0.999999
404		22		77	0.999999
408			22	77	0.999999
414		22	77		0.999999
415	22		77		0.999999
442	10		90		0.90298
443		90		10	0.90298
444	90		10		0.90298
445		90	10		0.90298
446	90		10		0.90298
455			10	90	0.90298
497	90			10	0.90298
498		90		10	0.90298
518	88	11			0.923564
520	88			11	0.923564
521		11	88		0.923564
527		10		90	0.90298
531	90			10	0.90298
533	10			90	0.90298
534		10	90		0.90298
535			90	10	0.90298
539			10	90	0.90298
541		10		90	0.90298
542	10		90		0.90298
548	10			90	0.90298
599	71	28			1.0
744	75		25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain