SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10018

Length: 1242 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene10018

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Protein PHLOEM PROTEIN 2-LIKE A10; Arabidopsis thaliana (Mouse-ear cress).	-	-	32%
Blast2go	protein phloem protein 2-like a10-like	-	-	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SY57

Fln msg: your sequence is shorter than subject: 330 - 414

Fln protein: RRDLGCHSNLVLSFLENYRALNNNNNNNNNLGTGRHSSPNLSPENSNSGPPVGSGFVDVLCRSDTRVLIAECIRNFVSTAVGIYLDKTMNINVYDEICSSLTNPKHEAQMKGILISVLNGAVETLVKTSHDVLTNGSSSRNAGMLQTKFIHEGGGVLTNGSCSKTIGMLQNTCNRENEIALSDCVEETEAISSAPQKTLAPFTVFGSQMTPRDQQQMVMDSRNADSGLSTTYHSWVDRISHTLAIPSNQKLFIEVSGRMTFEAIRSFCEFMLCKFSNFCFRTLPAMGHEASDGILEFMRYVGAKSIVIATLCLAICLHGLTGVRVLEVA*

Protein Length: 331

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTGGTTTTATCTTTTTTAGAAAATTACAGGGCACTTAATAATAATAATAATAATAATAATAATTTGGGGACTGGTCGGCATTCGTCTCCGAACTTAAGCCCGGAGAATTCGAACTCGGGACCACCTGTTGGATCGGGCTTTGTTGATGTGCTCTGTAGAAGTGACACTAGGGTTCTTATTGCCGAGTGCATTCGTAATTTTGTAAGCACAGCAGTGGGGATATATTTGGACAAAACGATGAACATCAATGTCTATGACGAGATTTGCTCAAGCCTCACCAATCCCAAGCATGAGGCCCAGATGAAGGGCATTTTAATTTCTGTCCTTAATGGGGCTGTTGAAACGCTTGTCAAAACTTCCCACGATGTTTTGACCAATGGGTCTTCTTCTAGGAATGCTGGGATGTTACAGACTAAGTTTATCCATGAAGGTGGTGGTGTTCTGACAAATGGATCTTGTTCTAAAACTATAGGGATGCTGCAGAATACGTGTAATCGTGAAAATGAGATTGCGTTGAGTGATTGTGTTGAAGAAACTGAAGCAATCTCATCTGCTCCCCAAAAAACCTTGGCTCCCTTCACAGTTTTTGGCTCTCAGATGACTCCCAGGGACCAGCAACAGATGGTCATGGACAGTAGGAATGCCGATTCTGGGCTTTCAACAACTTATCATAGCTGGGTTGATAGGATCTCCCATACTCTTGCCATACCCAGCAATCAGAAACTTTTCATTGAAGTAAGTGGCAGAATGACTTTTGAGGCCATCCGGTCTTTTTGTGAATTTATGCTTTGTAAATTTTCCAATTTTTGTTTTAGAACTTTGCCAGCTATGGGCCATGAAGCATCCGATGGAATTCTTGAGTTCATGAGGTATGTTGGAGCCAAATCGATCGTTATAGCTACCCTTTGTCTTGCAATCTGCTTGCATGGTCTGACTGGTGTGAGAGTTTTGGAAGTTGCATAA___CTCAATTGGGCTTTCGTTCAGAAGAATACTTTCGTGAATGTTAAAAGAATTAGAAACATCTGGGTGATTTTGTTGGGGATTAAACTTACTTCTTATTTTCTGTCTTCTCAATTGCTAAATCTGATGCAGCTGTATCATTGTATATTACTGGTCAGATTCTTCTGACCAATTATTCTTTATTAAAGATGAATTATTATACCACAGTAAAAGTATTTAGTTTCTGGTGAATAGATGTAGCTATTGAAGTAATGT

Fln Alignment:

Contig10018___FVDVLCRSDTRVLIAECIRNFVSTAVGIYLDKTMNINVYDEICSSLTNPKHEAQMKGILISVLNGAVETLVKTSHDVLTNGSSSRNAGMLQTKFIHEGGGVLTNGSCSKTIGMLQNTCNRENEIALSDCVEETEAISSAPQKTLAPFTVFGSQMTPRDQQQMVMDSRNADSGLSTTYHSWVDRISHTLAIPSNQKLFIEVSGRMTFEAIRSFCEFMLCKFSNFCFRTLPAMGHEASDGILEFMRYVGAKSIVIATLCLAICLHGLTG
Q9SY57_______________WVTLLGDDKCRELLADCIERFTSTAIGVYLDKTMDINTYDQIFEGLTNPKHQDSVKDVLVSVCNGALETIVRTSHD------------------------VFTSSRSKNVIEEIEDDDFKSNGSARSKMVSE--------------------------------------SGDGVKSNGWTEAIATTLAVPSNRRFMFDVTGRVTLETTRSIIAFIMVKTFQGFRKSINVVHEEVTDRGRQAVEYVGAKSSVIITVCLALYLHIISG

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
337		83		16	0.994512
338	83		16		0.994512
340	20			80	0.995493
341		20		80	0.995493
343	80	20			0.995493
525	33	66			1.0
542	33		66		1.0
657		20		80	0.995493
704	90		10		0.90298
705			10	90	0.90298
707	90		10		0.90298
710			90	10	0.90298
712	10			90	0.90298
742	90		10		0.90298
744	90	10			0.90298
745		90	10		0.90298
746		90		10	0.90298
747		90	10		0.90298
749		10	90		0.90298
751	88			11	0.923564
752	88		11		0.923564
753			11	88	0.923564
755	88			11	0.923564
757	88			11	0.923564
758	88	11			0.923564
762		11		88	0.923564
763	11			88	0.923564
918		90		10	0.999898
1011	38			61	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
63	90	TAA TAA TAA TAA TAA TAA TAA TAA TAA T	28

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain