SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10008

Length: 1717 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10008 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=1 Tax=Populus trichocarpa RepID=B9HIY9_POPTR	-	-	64%
FL-Next	sp=Probable galacturonosyltransferase-like 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	cazy family gt8	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	75%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	75%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	75%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	75%
Blast2go	pollen tube	GO:0090406	Biological Process	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9M8J2

Fln msg:

Fln protein: MEVSFQVNNNGRDSLGLAKLHNVLLDRLHIPRQSSTLPVFQEAPAFRNGKECIISAPASWKSTYSEKQEQEDVDAELCDTRAVHIAMTLDAAYLRGLVAGILSILQHAACPESVVFHFMVSRRQNNLKATLQATFPYLRFKLYHFDENIVKNKISYSIREALDQPLNYARTYLADILPSCLERIIYLDSDLVVVDDIAKLWRTTLGSHVLAAPEYCHANFTQYFTDSFWSDPILSQTFEGRKACYFNTGVMVVDLVKWRQGDYTAKIEEWMELHKERRIYELGSLPPFLLVFAGRVEAVDHRWNQHGLGGDNFEGRCRDLHPGPASLLHWSGKGKPWLRIDLRQSCPLDLLWAPYDLFQPAYNYLDV*

Protein Length: 369

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTTCTTTCTTTCTTTTTGCAAGCATTCGGGTTTTGATCCAGCTGAGCACTAATGGCGCGGTGGCAGCTAGAGTCCTACGGGAC_-_ATGGAGGTTAGCTTTCAAGTTAATAATAATGGCAGAGACAGCCTTGGTTTAGCAAAGCTTCACAACGTGCTATTGGACAGGCTGCATATACCACGGCAATCCTCGACCCTGCCTGTTTTCCAAGAAGCTCCTGCTTTTAGAAATGGTAAAGAATGCATCATCTCTGCGCCTGCTTCGTGGAAATCAACCTACTCTGAAAAACAAGAACAAGAAGATGTTGATGCAGAGCTCTGTGATACCAGGGCCGTGCATATAGCAATGACGCTGGACGCCGCTTATCTGAGAGGATTAGTCGCTGGAATTCTGTCCATTCTCCAACATGCTGCTTGTCCCGAGAGTGTGGTCTTCCATTTCATGGTCTCGCGACGCCAAAATAATCTTAAGGCTACGCTTCAGGCGACTTTTCCATATCTGCGCTTCAAATTATATCACTTTGACGAGAATATTGTCAAGAACAAGATATCATATTCCATTAGAGAGGCACTGGATCAGCCACTCAACTACGCTCGCACTTACTTGGCCGATATCTTGCCGTCCTGCCTGGAGAGGATCATTTACCTCGACTCTGATTTAGTTGTTGTGGATGATATTGCCAAGCTATGGCGAACGACCCTAGGATCGCACGTTCTGGCGGCCCCGGAATACTGCCACGCTAACTTTACCCAATATTTCACTGACAGTTTCTGGTCGGATCCCATTTTATCCCAGACATTCGAAGGGAGAAAAGCTTGTTATTTCAACACAGGCGTCATGGTGGTCGATCTGGTAAAATGGCGGCAAGGGGATTACACGGCTAAGATTGAAGAATGGATGGAATTGCACAAGGAACGACGAATCTACGAGCTGGGATCGCTGCCTCCGTTTCTGCTGGTATTCGCGGGACGCGTGGAAGCAGTGGATCACAGATGGAACCAGCATGGCCTAGGAGGGGATAACTTCGAAGGCCGTTGCAGAGACCTTCATCCGGGGCCTGCGAGTTTACTGCACTGGAGTGGCAAGGGAAAACCTTGGCTACGTATTGATCTGAGGCAGTCTTGTCCTCTGGATTTACTCTGGGCTCCGTACGACCTTTTTCAGCCCGCTTACAATTATTTAGATGTTTGA___AACTTCAAGTCTTTCTTTAAGATGGAGCTGTGGTACTCGGCCCTCTTTAATTGCTCCTACTGCAGAAGGTTCTCCAGATAAATTAGAGGTATGTGGATCAAATTAAGAGCGTTTGGACCTATATATATACAGGTAAATGCGGAATCCATCCATAAAACACATTGTCCAACTTTATAGATAATCAAGCCCAGCTTGCAGAAAATAGTGCTTAAACGCAGAAATTTAATTATCAATAACATCTTCGTTAGATCTGCAAGTAGGAGGACATGTGCCCTAATGTATCCAAGCCTCCATAAATTGCAGACGACGAAGACTAGTCTATTTTTAGTTTCTTGTTCCGGTTTCTTCCAACTGTATAAAGAATATGGTGCTTACATGATACTTTGCTGTCCTCTGTGTAGATCGATCTTTAGATTGAATTGAACTTTCCTTACCAACTGTATAAAGAATATGGTGTTTACATGATACTTTGCTGTCCTCTGTGTAGATCGATCTTAGATTG

Fln Alignment:

Contig10008___LHIPRQSSTLPVFQEAPAFRNGKECIISAPASWKSTYSEKQEQEDVDAELCDTRAVHIAMTLDAAYLRGLVAGILSILQHAACPESVVFHFM-VSRRQNNLKATLQATFPYLRFKLYHFDENIVKNKISYSIREALDQPLNYARTYLADILPSCLERIIYLDSDLVVVDDIAKLWRTTLGSHVLAAPEYCHANFTQYFTDSFWSDPILSQTFEGRKACYFNTGVMVVDLVKWRQGDYTAKIEEWMELHKERRIYELGSLPPFLLVFAGRVEAVDHRWNQHGLGGDNFEGRCRDLHPGPASLLHWSGKGKPWLRIDLRQSCPLDLLWAPYDLFQPAYNYLD
Q9M8J2_______________LHKP-SAPTLPVFREAPAFRNGDQC---------GTREADQ--------------IHIAMTLDTNYLRGTMAAVLSLLQHSTCPENLSFHFLSLPHFENDLFTSIKSTFPYLNFKIYQFDPNLVRSKISKSIRQALDQPLNYARIYLADIIPSSVDRIIYLDSDLVVVDDIEKLWHVEMEGKVVAAPEYCHANFTHYFTRTFWSDPVLVKVLEGKRPCYFNTGVMVVDVNKWRKGMYTQKVEEWMTIQKQKRIYHLGSLPPFLLIFAGDIKAVNHRWNQHGLGGDNFEGRCRTLHPGPISLLHWSGKGKPWLRLDSRKPCIVDHLWAPYDLYRSSRHSLE

SNPs (tot: 73)

Position	A %	C %	G %	T %	Probability
276	66		33		1.0
278			33	66	1.0
281	66		33		1.0
283		33		66	1.0
284	33			66	1.0
285			33	66	1.0
287		33		66	1.0
288	33		66		1.0
289	33	66			1.0
291			33	66	1.0
293		33		66	1.0
295	66	33			1.0
300			33	66	1.0
477		83	11		0.999887
482	11		5	83	0.999887
484			11	82	0.999919
496			6	80	0.999961
503			14	85	0.999981
504	14			85	0.999981
507	78		21		1.0
508	85	14			0.999981
511		7	14	78	0.999974
512		85	14		0.999981
514	85	14			0.999981
516	78	14	7		0.999974
517			14	85	0.999981
519	85	14			0.999981
520			14	71	0.999974
554	81			18	0.999994
560	81	18			0.999994
562			18	81	0.999994
570	81			18	0.999994
573	81	18			0.999994
577	9			72	0.999994
579		88	11		0.923564
580		88	11		0.923564
588	90		10		0.90298
688		83		16	0.994512
765		90		10	0.90298
766			10	90	0.90298
767	10	90			0.90298
771		10	90		0.90298
773			10	90	0.90298
774		10		90	0.90298
776	10		90		0.90298
777	10			90	0.90298
778		90	10		0.90298
781	10			90	0.90298
783		90	10		0.90298
784	10			90	0.90298
785		10		90	0.90298
826		85		14	0.993533
827		85	14		0.993533
828	14			85	0.993533
831	14	85			0.993533
837	14			85	0.993533
838			14	85	0.993533
839			14	85	0.993533
843	14	85			0.993533
844	85	14			0.993533
886	25	75			0.996473
888		75	25		0.996473
889	25	75			0.996473
891	25			75	0.996473
892			25	75	0.996473
897			25	75	0.996473
1261		20	80		0.995493
1263	80			20	0.995493
1264			80	20	0.995493
1452		25		75	0.996473
1453		25	75		0.996473
1547			14	85	0.993533
1706		80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1675	1689	AAAG AAAG AAAG AAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain