SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene10005

Length: 794 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene10005 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RelA-SpoT like protein RSH1 n=1 Tax=Nicotiana tabacum RepID=Q84LE7_TOBAC	-	-	5.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	like protein rsh1	-	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	62%
Blast2go	guanosine tetraphosphate metabolic process	GO:0015969	Biological Process	62%
Blast2go	amino acid binding	GO:0016597	Molecular Function	62%
Blast2go	catalytic activity	GO:0003824	Molecular Function	62%
Blast2go	chloroplast	GO:0009507	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	-
Sma3	TGS	IPR004095	-	-
Sma3	Metal-dependent phosphohydrolase, HD subdomain	IPR006674	-	-
Sma3	RelA/SpoT	IPR007685	-	-
Sma3	Beta-grasp domain	IPR012675	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
565	33			66	0.997452
566		66	33		0.997452
568			33	66	0.997452
569	33			66	0.997452
573	66	33			0.997452
574		33	66		0.997452
577			33	66	0.997452
578			33	66	0.997452
582	33			66	0.997452
584	66		33		0.997452
586		33		66	0.997452
587			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
577	591	TTCAA TTCAA TTCAA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain