SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9966

Length: 511 nt

UniGene Fasta

>sp_v2.0_unigene9966
GAGATGTGACGACTATGCATGCTAACAGTGGCTTTGGTTGTGAATAGCTTCTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACAAGTCACTTCTATAGTTAATGGCTTACCATTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATGTAAGTTAAATTCGATTCGAATAATCCACGAAAGTCGACTCTTCTCTGATGCCTTGTGGCATTGTTGATTAGGTCGGTTGTTTTTATTTGATTTCCGTGCAGAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCAATTTG

Ace file of the UniGene sp_v2.0_unigene9966

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PI-PLC X domain-containing protein [Arabidopsis thaliana] sp\|Q93XX5.1\|Y5713_ARATH RecName: Full=PI-PLC X domain-containing protein At5g67130; Flags: Precursor gb\|AAK96865.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM10115.1\| unknown protein [Arabidopsi	-	-	1.00053e-42	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	pi-plc x domain-containing protein at5g67130-like	-	-	0.0	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric diester hydrolases.	EC:3.1.4.-	-	0.0	62%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ether lipid metabolism	00565		0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	62%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	62%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	62%

Source	InterPros	Term	Type	Identity
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAN6

Fln msg: Distance to subject end: 244 aas, atg_distance in limit (1-15): atg_distance = 11, your sequence is shorter than subject: 165 - 389

Fln protein: MHANSGFGCE*LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATQVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNVS*IRFE*STKVDSSLMPCGIVD*VGCFYLISVQNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTAI

Protein Length: 166

Fln nts: GAGATGTGACGACT_-_ATGCATGCTAACAGTGGCTTTGGTTGTGAATAGCTTCTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACAAGTCACTTCTATAGTTAATGGCTTACCATTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATGTAAGTTAAATTCGATTCGAATAATCCACGAAAGTCGACTCTTCTCTGATGCCTTGTGGCATTGTTGATTAGGTCGGTTGTTTTTATTTGATTTCCGTGCAGAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCAATTTG

Fln Alignment:

Contig9966___TMHANSGFGCE*LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATQVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNVS*IRFE*STKVDSSLMPCGIVD*VGCFYLISVQNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTA
D5AAN6______________TARACSNGGCQ-LLDSCYTEGDCGSGLYCSTCQAVGQNQPVCVRGQATIVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDSVTNQLN----------------------------------NGVRGLMLDMYDFMGDVWLCHSLQGQCYNFTA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
157	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain