SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9910

Length: 1485 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9910

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	P4H isoform 1 [Arabidopsis thaliana] gb\|AAC64297.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAM15158.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAC42340.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04083.1\| unknown protein [Arabidopsis t	-	-	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	63%
Blast2go	prolyl 4-hydroxylase subunit alpha-1	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		0.0	71%
Blast2go	Metabolic pathways	01100		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	71%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	71%
Blast2go	L-ascorbic acid binding	GO:0031418	Molecular Function	71%
Blast2go	iron ion binding	GO:0005506	Molecular Function	71%
Blast2go	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9GU89

Fln msg: your sequence is shorter than subject: 261 - 287

Fln protein: MVRTRIVFGLLTFVTVGMIIGALFQLAFIRRLEESAGSSFPLYRRKGRESQEGYLYLPKGFPLWEQDEDARILRIGFVKPEVVSWSPRIIVLHNFLSAEGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKRSQRVATMLMYLSDDVEGGETHFPFAGDADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMRQKSIA*

Protein Length: 262

Fln nts: AATGTCACAAGGAAGATGGGCATTTGAATGGCGTTTGGCTATTACATCGTGCTGTGTATCCGTCTTCTCTTGCAGGTAGGAAATAGGAATACTCAAATTTAAACTGGTGACCCACATCTGGGGTCACTAATTGCTCTGCTCTCATATTAAGCGATCAGT_-_ATGGTTCGCACCAGGATTGTTTTCGGTCTCCTCACCTTCGTCACTGTTGGCATGATAATAGGTGCATTGTTTCAGTTGGCATTTATTCGGCGCTTGGAAGAGTCAGCTGGATCGAGCTTCCCTCTATATAGAAGAAAAGGACGTGAAAGTCAAGAAGGATATCTTTACCTACCTAAAGGATTTCCGCTGTGGGAGCAGGATGAAGATGCAAGGATTCTTCGCATTGGATTTGTCAAACCTGAAGTAGTTTCTTGGTCCCCAAGAATTATTGTACTCCACAATTTTTTGAGTGCTGAGGGTGTTAAAAGTAATGTTCGAACAAGTTCTGGGATGTTCTTAAATTACGAGGAGAAAAAGTATCCAATGATTCAGGCAATTGAGAAGCGCATTTCAGTTTATTCGCAAGTACCAGTAGAAAATGGAGAACTTATGCAGGTTCTACGGTATGAGGAAGGTGAATTTTATAAATCTCATCATGATTATTTCTCGGATGAGTTCAACTTGAAACGAAGCCAAAGAGTTGCAACAATGCTGATGTATCTCAGTGATGATGTAGAAGGGGGAGAAACACATTTTCCCTTTGCTGGAGATGCAGACTGTAGTTGTGGAGGCAAGAGGGTGATGGGAATTTGTGTGAAACCAATAAAAGGAGATGCGGTTCTTTTCTGGAGTGTGGGTCTAGATGGTTCAGTGGATCCGAAAAGTCGTCATGGAGGTTGTGAGGTGCTAGGGGGTGTTAAATGGTCGGCTACAAAATGGATGAGACAGAAAAGCATTGCCTGA___TGGTCCATGTATTATAGTCTATGTTAAATTAATTTATTGAAGTAGCACATCTATGGAGAGGTGTCGATGCTTAGCACATCACAAAGATGAATGATGCAAATCCTTTTAGATATTGATACAAAAGGCTGTGCAAATGCAATGCAATATATAGGAACGATGTTTTTCTGTGCAAAGTTCATTTTTGGATGAGATCAAAGTTTCAAGAGCTTAGTTGTGAAAGTTTGCCTCTTAAGATGTAATGGTCACGGGACAATGATTACGTCATTAACCCAATAGATGGTTGTAATGGTATATGGCACGAAGAATGAAGGGAGTAGTTATTGCAAGCATGGAAATTTAAGCTATTTTTCAATTGCTAGCCATGACATTGATGGCCGGTGGTGGCATGTCCTTGAGGTTAGCTGGTTGATTTCTAGAATGTCTTCCTCAAGTGGCATGAAATTATATCAAAGGCTAAATTCAAAAGTCTTCCTTGTGTAAAGATGCATTATTTTTAACCTGTACTACTTTCTACCTAACTAAAACAGGTTGTTCAACATTTTA

Fln Alignment:

Contig9910___RIVFGLLTFVTVGMIIGALFQLAFIRRLEESAGSSFPLYRRKGRESQEGYLYLPKGFPLWEQDEDARILRIGFVKPEVVSWSPRIIVLHNFLSAE-------------------------GVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYKSHHDYFSDEFNLKRS-QRVATMLMYLSDDVEGGETHFPFAGDADCSCGGKRVMGICVKPIKGDAVLFWSVGLDGSVDPKSRHGGCEVLGGVKWSATKWMRQKS
B9GU89______________KIVFGLLAFVTAGMIVGAFFQLAFILKLEDSYGTKFPSFKRVRKLQSDAYLQLPRGISHWDNDTEAAVLRIGYVKPEIISWSPRIIVLHDFLSSEECDYLRALAKPRLRISTVVDVKTGKGIESKVRTSSGMFLSSEEKTYQVVQAIEKRISVYSQVPIENGELIQVLRYEKNQYYKPHHDYFSDTFNLKRGGQRVATMLMYLSDNVEGGETYFPMAGSGKCSCGGKVVDGLSVKPIKGNAVLFWSMGLDGQSDPSSIHGGCEVLSGVKWSATKWMRQRA

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
322	25	25		50	0.995533
325			25	75	0.996473
382		75		25	0.996473
464			33	66	0.997452
466	66			33	0.997452
467	66			33	0.997452
469		33	66		0.997452
472	66		33		0.997452
475			66	33	0.997452
550		75	25		0.996473
565			75	25	0.996473
602		75		25	0.996473
757	60		40		1.0
766		16		83	0.994512
774	16		83		0.994512
777	83			16	0.994512
778			83	16	0.994512
780	40		60		1.0
846	80			20	0.995493
848	20		80		0.995493
853	80			20	0.995493
879	20		80		0.995493
881	20			80	0.995493
884	20			80	0.995493
885			80	20	0.995493
892	20	80			0.995493
893	20			80	0.995493
896	20		80		0.995493
897		14	85		0.993533
898	16		83		0.994512
975	87	12			0.992554
1012		85		14	0.993533
1026	77		22		0.999999
1029	77		22		0.999999
1030		77		22	0.999999
1031	77		22		0.999999
1033	77	22			0.999999
1034		22	77		0.999999
1035	77			22	0.999999
1038	77		22		0.999999
1039	77	22			0.999999
1047	75	25			1.0
1051	25	75			1.0
1104	57		42		1.0
1119	90		10		0.90298
1120	90			10	0.90298
1121	90	10			0.90298
1124			10	90	0.90298
1127		10		90	0.90298
1128		10		90	0.90298
1134	90	10			0.90298
1137	90			10	0.90298
1138		10	90		0.90298
1172		25	75		1.0
1188		33		66	1.0
1227	10		90		0.90298
1269		10		90	0.90298
1420		75		25	0.996473
1449	33	66			0.997452
1486	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain