SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9900

Length: 2578 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9900
CGTCGTGACCTTGGCTGTCACTCAGGAACATGGTTGAATATAAACACGGTTGGGAGCATTGGGCACATCGAAATTTTCTCAATTCATTATTATACTAGTCCTAAAAAGGTAGGAGGGGGTGGCTCAACTTCCTTCTTAAACAAAAATTGAAAGGGATTCTAAATTCTAACCTACCATAACCTCCCTAAATCACAATAATAATGAACTTGTAGAAGAGAGTAATCACAACAACAGCTACTCAGCATCTGCAACAGGATTCCTTGCAACACTTGTCTTGTGATGCCCAAATACTAAATTCATCTACTCCATCCACCTTTGCATGACACAATCTTCGCAGAAACTGTTGGATTTGCAATTGCATTCAGGGGAGTTGTGGTTCTCGTGTCTGAATATATACCTGCTTTGGTGTATGGAACGCATCACCCTGAAGTAAATCAAATAATTCCCAGGCTTCTCAGGACAGGGCAATGGCGGGCTCCGCACTTGCAGGCATGACTGCTTCTTTATCCATGGCTGGATTCGAACCCAGTCGAAGAACTTGCAGTCGTTCGATTTCTAGATTTGATGGTCTCAGAGCTGCTGAAGCTGAGCTCTCTGATGTTTCTGTGCTCTTGGGCGTTCGGCCTAACAGGCTATCTCGTGCTGGTCCCAAGACCGGCGTCCGAGCCATGTTACTTCCTTCAGTCAATGCCCTTAACAGAGAAAAAGATCCTAAAAAGAGAGTGGTTATTACAGGCATGGGGCTAGTTTCTGTTTTCGGAAATAATGTTGACACATATTACGAAAGACTCCTGGAAGGTCAGAGTGGGATTACCCCTATAGACCGCTTTGATGCTTCAAAGTTTCCCACAAGATTTGGAGGACAGATTCGGGGATTCTCATCTGAGGGTTATATTGATCCAAAGAATGACCGTCGTCTGGATGATTGTATTAGATATTGCCTGGTTAGTGCGCAAAAGGCACTTGAAGATGCAGATCTGGGAAAGGATAAAATAAATAAGATTGATAAGGAGCGAGCTGGTGTACTAGTAGGCAGTGGAATGGGTGGGCTAAAAGTTTTTTCTGATGGAGTACAGGCTCTTCTAGACAAAGGATACAGGAAAATAACACCCTTTTTTATACCATATGCAATTACCAACATGGGCTCTGCATTGCTTGGCATTGAAGTAGGATTCATGGGTCCAAATTATTCTATATCAACAGCATGTGCTACATCCAACTATTGCTTCTATGCAGCTGCAAATCATATTCGCAGAGGTGAGGCAGATATCATGCTAGCTGGTGGTACTGAAGCAGCAATTATTCCCATTGGTTTGGGTGGGTTTGTTGCATGCCGAGCCTTATCTCAGAGAAATGATGATCCTCAGTCTGCCTCAAGGCCCTGGGACAAAGACCGAGATGGCTTTGTCATGGGTGAAGGTGCAGGCGTGTTGGTTATGGAGAGCTTGGAACATGCAAAGAAGAGAGGTGCTCCAATTCTTGCTGAATATCTTGGTGGAGCTATTAACTGTGATGCTTATCACATGACAGACCCAAGGGCTGATGGCCTTGGTGTCTCATCATGTATTGAGAGGAGTCTTATTGATGCAGGGGTGTCACCAGAAGAGGTGAATTATATAAATGCGCATGCCACATCAACTCTTGCAGGTGACTTGGCTGAGGTTAATGCCATCAAGAGTGTGTTCAAAAACACATCTGAAATAAAAATAAATGCAACTAAGTCTATGATAGGGCACTGTCTAGGTGCAGCTGGTGGGCTAGAAGCCATTGCCACTGTCAAAGCCATCAATACTGGTTGGCTGCATCCATCGATAAATCAATTTAACCCAGAACCCGCGGTGGAATTTGATACTGTTCCTAACGTAAAGAAGCAGCACGAAGTAAATGTTGCTATTTCAAACTCGTTTGGTTTTGGGGGCCATAATTCAGTTGTAGTGTTCGCACCCTATCGAGAGTGAGAACACATAGCTTTGTTTATTGTTTGAAAATAGTCCATGTAGCAGATGCAATCTTTAAAAAATGAGAGAGCATTTCATTTGATTCTTTTATGCTACTGAAACTGCAAGAGGTTTCCCATTATTAATTGGAAACCTCTGTTGTGAAATAAATTTTAATTGACATAAAAAGTTCAGATTGGGAGCAGAAATATTGGTGTCAGAGTAGCAGTTGGATTCATTCTTCAATCAAGAGAGAATATGTTATTCTCTTCATTTTATCTTTAGTATAACGTCTTCATCCTATCATTATGACATTTAGGATCAGCAGGGGTTCAAATCTTCCTCAAATTTTGGCCATCATATTTTTCATATTTCACATGCAAGAAAAGGGTTTCCTAGTAACCTTCTTTCACCTGCAAGAAGATGGTTTACTAGTAAGAATATTTCAAATGATGTGTATGCTTTACTAGTAAGAGTGATCGAATAGAGAATCCAATGTGTGACTTTTTATTGTCGTGATGTTTCTCATATGACTGAGCTGTTAAAATTTGTCAGGTGCAGAGCTAGAGTATTCAGTGGTAATGTTTTCCTGTTTCTTGGGGGCTCGTGACTCTTGTATCAGAATTATTTTAATTGTTGAG

Ace file of the UniGene sp_v2.0_unigene9900 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-ketoacyl-ACP synthase I-1 n=5 Tax=Papilionoideae RepID=D8KXY8_ARAHY	-	-	82%
FL-Next	sp=3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	85%
Blast2go	at5g46290 mpl12_7	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	92%
Blast2go	Metabolic pathways	01100		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	92%
Blast2go	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	3-oxoacyl-[acyl-carrier-protein] synthase 2	IPR017568	-	-
Sma3	Beta-ketoacyl synthase	IPR000794	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-
Sma3	Beta-ketoacyl synthase, C-terminal	IPR014031	-	-
Sma3	Beta-ketoacyl synthase, N-terminal	IPR014030	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P52410

Fln msg:

Fln protein: MAGSALAGMTASLSMAGFEPSRRTCSRSISRFDGLRAAEAELSDVSVLLGVRPNRLSRAGPKTGVRAMLLPSVNALNREKDPKKRVVITGMGLVSVFGNNVDTYYERLLEGQSGITPIDRFDASKFPTRFGGQIRGFSSEGYIDPKNDRRLDDCIRYCLVSAQKALEDADLGKDKINKIDKERAGVLVGSGMGGLKVFSDGVQALLDKGYRKITPFFIPYAITNMGSALLGIEVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQSASRPWDKDRDGFVMGEGAGVLVMESLEHAKKRGAPILAEYLGGAINCDAYHMTDPRADGLGVSSCIERSLIDAGVSPEEVNYINAHATSTLAGDLAEVNAIKSVFKNTSEIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEPAVEFDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPYRE*

Protein Length: 498

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAACATGGTTGAATATAAACACGGTTGGGAGCATTGGGCACATCGAAATTTTCTCAATTCATTATTATACTAGTCCTAAAAAGGTAGGAGGGGGTGGCTCAACTTCCTTCTTAAACAAAAATTGAAAGGGATTCTAAATTCTAACCTACCATAACCTCCCTAAATCACAATAATAATGAACTTGTAGAAGAGAGTAATCACAACAACAGCTACTCAGCATCTGCAACAGGATTCCTTGCAACACTTGTCTTGTGATGCCCAAATACTAAATTCATCTACTCCATCCACCTTTGCATGACACAATCTTCGCAGAAACTGTTGGATTTGCAATTGCATTCAGGGGAGTTGTGGTTCTCGTGTCTGAATATATACCTGCTTTGGTGTATGGAACGCATCACCCTGAAGTAAATCAAATAATTCCCAGGCTTCTCAGGACAGGGCA_-_ATGGCGGGCTCCGCACTTGCAGGCATGACTGCTTCTTTATCCATGGCTGGATTCGAACCCAGTCGAAGAACTTGCAGTCGTTCGATTTCTAGATTTGATGGTCTCAGAGCTGCTGAAGCTGAGCTCTCTGATGTTTCTGTGCTCTTGGGCGTTCGGCCTAACAGGCTATCTCGTGCTGGTCCCAAGACCGGCGTCCGAGCCATGTTACTTCCTTCAGTCAATGCCCTTAACAGAGAAAAAGATCCTAAAAAGAGAGTGGTTATTACAGGCATGGGGCTAGTTTCTGTTTTCGGAAATAATGTTGACACATATTACGAAAGACTCCTGGAAGGTCAGAGTGGGATTACCCCTATAGACCGCTTTGATGCTTCAAAGTTTCCCACAAGATTTGGAGGACAGATTCGGGGATTCTCATCTGAGGGTTATATTGATCCAAAGAATGACCGTCGTCTGGATGATTGTATTAGATATTGCCTGGTTAGTGCGCAAAAGGCACTTGAAGATGCAGATCTGGGAAAGGATAAAATAAATAAGATTGATAAGGAGCGAGCTGGTGTACTAGTAGGCAGTGGAATGGGTGGGCTAAAAGTTTTTTCTGATGGAGTACAGGCTCTTCTAGACAAAGGATACAGGAAAATAACACCCTTTTTTATACCATATGCAATTACCAACATGGGCTCTGCATTGCTTGGCATTGAAGTAGGATTCATGGGTCCAAATTATTCTATATCAACAGCATGTGCTACATCCAACTATTGCTTCTATGCAGCTGCAAATCATATTCGCAGAGGTGAGGCAGATATCATGCTAGCTGGTGGTACTGAAGCAGCAATTATTCCCATTGGTTTGGGTGGGTTTGTTGCATGCCGAGCCTTATCTCAGAGAAATGATGATCCTCAGTCTGCCTCAAGGCCCTGGGACAAAGACCGAGATGGCTTTGTCATGGGTGAAGGTGCAGGCGTGTTGGTTATGGAGAGCTTGGAACATGCAAAGAAGAGAGGTGCTCCAATTCTTGCTGAATATCTTGGTGGAGCTATTAACTGTGATGCTTATCACATGACAGACCCAAGGGCTGATGGCCTTGGTGTCTCATCATGTATTGAGAGGAGTCTTATTGATGCAGGGGTGTCACCAGAAGAGGTGAATTATATAAATGCGCATGCCACATCAACTCTTGCAGGTGACTTGGCTGAGGTTAATGCCATCAAGAGTGTGTTCAAAAACACATCTGAAATAAAAATAAATGCAACTAAGTCTATGATAGGGCACTGTCTAGGTGCAGCTGGTGGGCTAGAAGCCATTGCCACTGTCAAAGCCATCAATACTGGTTGGCTGCATCCATCGATAAATCAATTTAACCCAGAACCCGCGGTGGAATTTGATACTGTTCCTAACGTAAAGAAGCAGCACGAAGTAAATGTTGCTATTTCAAACTCGTTTGGTTTTGGGGGCCATAATTCAGTTGTAGTGTTCGCACCCTATCGAGAGTGA___GAACACATAGCTTTGTTTATTGTTTGAAAATAGTCCATGTAGCAGATGCAATCTTTAAAAAATGAGAGAGCATTTCATTTGATTCTTTTATGCTACTGAAACTGCAAGAGGTTTCCCATTATTAATTGGAAACCTCTGTTGTGAAATAAATTTTAATTGACATAAAAAGTTCAGATTGGGAGCAGAAATATTGGTGTCAGAGTAGCAGTTGGATTCATTCTTCAATCAAGAGAGAATATGTTATTCTCTTCATTTTATCTTTAGTATAACGTCTTCATCCTATCATTATGACATTTAGGATCAGCAGGGGTTCAAATCTTCCTCAAATTTTGGCCATCATATTTTTCATATTTCACATGCAAGAAAAGGGTTTCCTAGTAACCTTCTTTCACCTGCAAGAAGATGGTTTACTAGTAAGAATATTTCAAATGATGTGTATGCTTTACTAGTAAGAGTGATCGAATAGAGAATCCAATGTGTGACTTTTTATTGTCGTGATGTTTCTCATATGACTGAGCTGTTAAAATTTGTCAGGTGCAGAGCTAGAGTATTCAGTGGTAATGTTTTCCTGTTTCTTGGGGGCTCGTGACTCTTGTATCAGAATTATTTTAATTGTTGAG

Fln Alignment:

Contig9900___SVNALNREKDPKKRVVITGMGLVSVFGNNVDTYYERLLEGQSGITPIDRFDASKFPTRFGGQIRGFSSEGYIDPKNDRRLDDCIRYCLVSAQKALEDADLGKDKINKIDKERAGVLVGSGMGGLKVFSDGVQALLDKGYRKITPFFIPYAITNMGSALLGIEVGFMGPNYSISTACATSNYCFYAAANHIRRGEADIMLAGGTEAAIIPIGLGGFVACRALSQRNDDPQSASRPWDKDRDGFVMGEGAGVLVMESLEHAKKRGAPILAEYLGGAINCDAYHMTDPRADGLGVSSCIERSLIDAGVSPEEVNYINAHATSTLAGDLAEVNAIKSVFKNTSEIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEPAVEFDTVPNVKKQHEVNVAISNSFGFGGHNSVVVFAPYR
P52410______________TVSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAGVLVGTGMGGLTVFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYAAANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMGEGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGLEAIATVKAINTGWLHPSINQFNPEQAVDFDTVPNEKKQHEVDVAISNSFGFGGHNSVVAFSAFK

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
2258	13			86	1.0
2261		86	13		1.0
2263		13		86	1.0
2266	82	13	4		1.0
2272		18	81		1.0
2273	4		81		1.0
2275		13		81	1.0
2277	13		86		1.0
2278	81	13		4	1.0
2347	84		15		1.0
2348	15		84		1.0
2350	15			84	1.0
2352		15		84	1.0
2353		15		84	1.0
2354	15		84		1.0
2355	15			84	1.0
2356			15	84	1.0
2359		21	78		1.0
2361		15		84	1.0
2362			16	83	1.0
2365			16	83	1.0
2428		88	11		0.923564
2429	11	88			0.923564
2430		88	11		0.923564
2432			11	88	0.923564
2433	11			88	0.923564
2434	12	87			0.992554
2435	87	12			0.992554
2436	87		12		0.992554
2437		12		87	0.992554
2438		12		87	0.992554
2439	14			85	0.993533
2440	14			85	0.993533
2441			16	83	0.994512
2444		16		83	0.994512
2447	83	16			0.994512
2450	83	16			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain