SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9874

Length: 1638 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TGA10 transcription factor n=1 Tax=Nicotiana tabacum RepID=Q52MZ2_TOBAC	-	-	55%
FL-Next	sp=TGACG-sequence-specific DNA-binding protein TGA-2.1; Nicotiana tabacum (Common tobacco).	-	-	57%
Blast2go	transcription factor hbp-1b -like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	71%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	TIP41-like protein	IPR007303	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: O24160

Fln msg: atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 402 - 456

Fln protein: MFPSKPMHFEPSPPSLSRATSVSGGDSFDSQSAQQTNISSFKRAPQQPEFESPTSAKKSEMMQITDMGRNNSPATEKFNELDKDVKHEVNRRAHTSSSEPEGTKTPDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQLEQELQRARTQGVFMGPNGYLNDQSHLTGNAASNGGLSSAAAFDMEYQRWLEEHHRHMCDLRAALQEHLPDNDLRVFVENCLAHYDDLLHIKIVGAKTDIFYLVSGMWKTPAERCFMWMGGFRPSEILKILIPQIEPLTEQQYQCIYSLQQSSLQAEEAFSQGMEELQHTISETIAAGSLSSPSNMANYMGQMAVAMGKLANLEILVSQADSLRHQTLQQLHRILTTRQSAKCLLSIGEYNSRLRALSSLWSARPRE*

Protein Length: 403

Fln nts: ATGGGACATCAACTGGGCTGAGACAAATTCAAGTATTACATGAGATACACAAGGAAAATAGAGTTTTAGATTGTGACTACAGGCTTATATTTCTGTGCAGAATGTTCTGGTGGGAATCGATCACGGGCAACATTGAAC_-_ATGTTTCCTTCCAAGCCAATGCACTTTGAACCCTCCCCACCGTCGCTCTCTAGGGCAACGTCTGTATCTGGTGGCGACAGTTTCGATTCCCAGTCTGCTCAGCAAACGAATATCAGTTCTTTCAAACGAGCTCCACAACAACCCGAGTTCGAATCACCAACCAGCGCAAAAAAATCAGAGATGATGCAGATAACTGACATGGGGAGAAACAACAGTCCTGCCACCGAAAAGTTCAATGAGCTGGACAAAGATGTGAAGCATGAGGTGAATCGCAGAGCTCACACGTCCAGTTCTGAGCCTGAGGGTACCAAGACTCCTGATGCCAAGACATTGAGGAGGCTTGCTCAAAATCGAGAGGCTGCTCGGAAAAGTAGATTGAGGAAGAAGGCATACGTTCAGCAATTAGAAAGCAGTCGAATAAAACTGGCCCAGCTTGAGCAAGAGCTTCAGCGAGCTCGAACACAGGGAGTGTTTATGGGACCGAACGGGTACCTGAATGATCAAAGTCATCTCACTGGGAATGCTGCCTCCAACGGAGGCTTAAGCTCTGCTGCTGCATTCGACATGGAGTACCAAAGATGGCTAGAAGAGCACCACCGTCACATGTGCGACCTTCGAGCAGCATTGCAAGAACATCTGCCAGACAATGATCTCCGAGTGTTTGTAGAGAACTGCCTAGCCCACTATGACGATCTCTTGCACATCAAGATTGTGGGTGCCAAGACAGACATTTTCTATCTGGTTTCAGGGATGTGGAAGACCCCAGCAGAACGCTGTTTCATGTGGATGGGAGGCTTCCGGCCATCAGAAATTCTCAAGATCCTGATACCACAGATAGAACCATTGACAGAGCAACAGTATCAATGCATTTATAGTCTGCAGCAGTCTTCACTCCAAGCAGAAGAAGCCTTTTCGCAGGGCATGGAAGAGCTACAACACACTATTTCCGAGACCATAGCTGCAGGATCCCTCAGCTCACCTTCAAACATGGCCAACTACATGGGGCAAATGGCTGTCGCCATGGGAAAACTTGCCAATTTAGAAATTTTGGTAAGCCAGGCTGATAGTCTAAGACACCAGACATTGCAACAACTACACAGAATCCTCACCACGCGCCAGTCAGCCAAATGCTTGCTTTCAATAGGAGAATACAACTCTCGACTTCGTGCACTAAGCTCTCTTTGGTCAGCCAGACCCAGAGAATGAGTATTAATCACTTTGCAGATCATCATTCCAATGAGCCTTCATTGGATAATTAATTAGGTTGGGTCCATAGTTTTTTAATCATAATTTGTACTGCATGGCTAATTTCCTACCATGGGATAAGCTCCAAGTTTAGAATTAGAATTCATACAACATTGTGCATTATTAATTCGATTTGTGCTCTGAGATCAGAGTCTCCTGCTCATCACGTTAACTTTCACCATTGATGATCATGATCTGTGACCTTTAGACACCTGCATGCTACTAATCAGGCTTGCAGATAGTGAGTTCTTAGTG

Fln Alignment:

Contig9874___TEKFNELDKDVKHEVNRRAHTSSSEPEGTKTPDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQLEQELQRARTQGVFMGPNGYLNDQSHLTXXXXXXXXXXXXXXFDMEYQRWLEEHHRHMCDLRAALQEHLPDNDLRVFVENCLAHYDDLLHIKIVGAKTDIFYLVSGMWKTPAERCFMWMGGFRPSEILKILIPQIEPLTEQQYQCIYSLQQSSLQAEEAFSQGMEELQHTISETIAAGSLS---SPSNMANYMGQMAVAMGKLANLEILVSQADSLRHQTLQQLHRILTTRQSAKCLLSIGEY
O24160______________TDTSTDMDGDDKNQLIEAGQSSDKSKE--KVLDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQRARQQGKYISN---IADQSN-------GVGANGPLAFDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRVKGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKLLVNQLEPLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALLAINEY

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
307	50	50			1.0
308	50	50			1.0
554	20			80	0.995493
558	80			20	0.995493
563	75		25		0.996473
564		75		25	0.996473
737	10	90			0.90298
815		88	11		0.923564
817	10			90	0.90298
820		90		10	0.90298
871			12	87	0.992554
874		12		87	0.992554
885	11			88	0.923564
888			88	11	0.923564
889			88	11	0.923564
917		33		66	1.0
931			88	11	0.923564
1072	11			88	0.923564
1074		88		11	0.923564
1075	88		11		0.923564
1076	88			11	0.923564
1211	71		28		1.0
1290		16		83	0.994512
1292		85		14	0.993533
1293	85			14	0.993533
1625		33		66	0.997452
1627			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain