SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9869

Length: 414 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9869
CGTCGTGACCTTGGCTGTCACTCAAGCCTCGTTACAGTGCAGTAAGTAAAACGAATAGAAATCAGAAGGAAATTTCGAAGTTCCATAATTTCCATTCCCTGGTGAGACAGGCCTACAAAGGCACGCTTATCGGCACCGGAGGTTATACCAGAGACTCTGGGATGGCTGCCGTCGTGACCTTGGCTGTCACTCATTATTTCTTATGGTCGTCTTTTCATTTCGAATCCTGATCTTCCCCTCAGATTCGCGCTGGGAACGCGGAGGTTGAACAAGTACGATAGATCTACCTTTTATACTTGGGATCAGGTTGTGGGATATACAGATTACCGTTTTCTTCACGATCACAGTGAAGATGAAAATGTGGCTTCGATGTACGGTACACTAAGATCTGCTCTGTGATACCGCAAGGCACAC

Ace file of the UniGene sp_v2.0_unigene9869 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxo-phytodienoic acid reductase n=1 Tax=Zea mays RepID=Q49HE1_MAIZE	-	-	4.0e-14	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	12-oxophytodienoate reductase	-	-	1.3886e-14	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	1.3886e-14	75%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.3886e-14	75%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.3886e-14	75%
Blast2go	FMN binding	GO:0010181	Molecular Function	1.3886e-14	75%

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg: Separated hits, possible frame ERROR between 179 and 202, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 133 - 376

Fln protein: S*PWLSLKPRYSAVSKTNRNQKEISKFHNFHSLVRQAYKGTLIGTGGYTRDSGMAAVVxxxxxxxxxYGRLFISNPDLPLRFALGTRRLNKYDRSTFYTWDQVVGYTDYRFLHDHSEDENVASMYGTLRSAL*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCCTCGTTACAGTGCAGTAAGTAAAACGAATAGAAATCAGAAGGAAATTTCGAAGTTCCATAATTTCCATTCCCTGGTGAGACAGGCCTACAAAGGCACGCTTATCGGCACCGGAGGTTATACCAGAGACTCTGGGATGGCTGCCGTCGTGACxxxxxxxxxxxxxxxxxxxxxxxxTTATGGTCGTCTTTTCATTTCGAATCCTGATCTTCCCCTCAGATTCGCGCTGGGAACGCGGAGGTTGAACAAGTACGATAGATCTACCTTTTATACTTGGGATCAGGTTGTGGGATATACAGATTACCGTTTTCTTCACGATCACAGTGAAGATGAAAATGTGGCTTCGATGTACGGTACACTAAGATCTGCTCTGTGATACCGCAAGGCACAC

Fln Alignment:

Contig9869___VRQAYKGTLIGTGGYTRDSGMAAVVTxxxxxxxxYGRLFISNPDLPLRFALGTRRLNKYDRSTFYTWDQVVGYTDYRFL
A9NT17______________MRKAFKGSFLVAGGYDREDGNAAIASxxxxxxxxYGRIFLANPDLPRRFELNAS-LNKYDRNTFYIPDPVVGYTDYPFL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
79	77	22			0.999999
131		10	90		0.90298
133			10	90	0.90298
135		10		90	0.90298
137	10			90	0.90298
138		90	10		0.90298
143			10	90	0.90298
144	10			90	0.90298
201	88			11	0.923564
202	88		11		0.923564
207	11		88		0.923564
208	88		11		0.923564
214	88		11		0.923564
216	88			11	0.923564
217	88	11			0.923564
219		11		88	0.923564
220	77		11		0.968132
222		12		75	0.975346
227		14	85		0.993533
230	85			14	0.993533
231			85	14	0.993533
233		85		14	0.993533
234	85	14			0.993533
235	85	14			0.993533
237		14	85		0.993533
239	14	85			0.993533
240	85	14			0.993533
242		14	85		0.993533
245			85	14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain