SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9851

Length: 1358 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9851

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-amylase 2 [Arabidopsis thaliana] sp\|O65258.2\|BAM2_ARATH RecName: Full=Beta-amylase 2, chloroplastic; AltName: Full=1,4-alpha-D-glucan maltohydrolase; AltName: Full=Beta-amylase 9; Flags: Precursor gb\|AEE81889.1\| beta-amylase 2 [Arabidopsis thaliana]	-	-	74%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	beta-amylase 7-like	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	83%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		83%
Blast2go	Metabolic pathways	01100		83%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	83%
Blast2go	gametophyte development	GO:0048229	Biological Process	83%
Blast2go	transmembrane receptor protein tyrosine kinase signaling pathway	GO:0007169	Biological Process	83%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	83%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	83%
Blast2go	polysaccharide catabolic process	GO:0000272	Biological Process	83%
Blast2go	cation binding	GO:0043169	Molecular Function	83%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	83%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	83%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: W2: There is no M at the beginning, your sequence is shorter than subject: 439 - 492

Fln protein: RRDLGCHSSLKSRSCWVKNWGWRCQPVASLPLVEENGKSKDPTEIAGCSVETEKVKELPPKEPERDFAGTPCIPVYVMLPLGIINEKCELVDPETLTKQLRTLKSANVDGVMVDCWWGIVEGDNPQKYNWSGYRELFNILRKTKLKLQVVMSFHECGGNVGDDVNITLPKWILEIGKDNPDIFFTDREGRRNKECLTWGIDKERVLRGRTGLEVYFDFMRSFRMEFNDYFEDGLISEIEIGLGPCGELRYPSYPEKHGWKYPGIGEFQISGIHWWYKTASHAAELAAGFYNPSNRDGYSPIAQMLKKHDAAFNFTCVELRTLVHEEGFPEAMADPEGLVWQVLNAAWDAGIPVASENALPCFDRDGYNKILENAKPRTDPDERHLVAFTYLRLNPTLMEEVNFNEFERFVKRMHGAGAAWKKSAGSNGAVRRQGFDLQ*

Protein Length: 440

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTTGAAATCCCGTTCTTGTTGGGTGAAGAATTGGGGTTGGAGATGCCAACCAGTAGCTTCGTTGCCTTTAGTGGAAGAGAACGGTAAAAGTAAGGATCCCACAGAGATTGCTGGATGCTCGGTGGAGACTGAGAAGGTGAAAGAGTTACCCCCAAAGGAGCCAGAACGTGATTTTGCAGGAACTCCATGTATTCCAGTATATGTGATGCTGCCACTTGGAATTATCAATGAGAAATGTGAATTAGTAGATCCAGAAACATTGACAAAACAGTTGAGAACCTTGAAATCTGCAAATGTTGATGGTGTGATGGTAGATTGCTGGTGGGGTATAGTTGAGGGTGATAATCCCCAGAAGTATAATTGGTCTGGCTACAGGGAACTATTCAATATTTTGCGCAAAACAAAGCTTAAACTGCAGGTGGTTATGTCATTTCATGAATGTGGTGGGAATGTGGGCGATGATGTGAACATTACCCTGCCAAAATGGATATTGGAGATTGGGAAAGATAATCCTGATATATTTTTCACAGATCGGGAGGGAAGGCGAAATAAGGAATGCCTCACTTGGGGCATAGATAAGGAAAGAGTCCTGAGAGGTCGAACGGGTCTTGAGGTTTATTTTGATTTTATGAGAAGCTTCCGAATGGAGTTTAATGATTATTTTGAAGATGGTCTTATCTCCGAGATAGAAATTGGATTGGGTCCATGTGGAGAATTAAGATATCCCTCATATCCAGAAAAGCATGGATGGAAGTATCCAGGCATTGGCGAGTTTCAGATTTCAGGAATTCATTGGTGGTATAAGACTGCTAGTCATGCTGCAGAGCTTGCAGCGGGCTTCTATAATCCATCAAATCGTGATGGGTATTCTCCAATAGCTCAAATGCTTAAGAAACATGATGCTGCATTCAACTTCACCTGTGTTGAATTGCGCACTTTGGTTCATGAGGAAGGGTTCCCTGAAGCAATGGCAGATCCAGAGGGTCTTGTTTGGCAGGTTTTGAATGCAGCCTGGGATGCTGGCATTCCTGTGGCTAGTGAAAATGCACTTCCTTGTTTTGATAGAGATGGGTACAATAAGATCCTAGAGAATGCAAAGCCAAGGACCGATCCCGATGAGCGGCATTTGGTTGCCTTTACATACCTAAGGCTCAACCCTACTTTGATGGAGGAAGTCAATTTTAACGAATTTGAACGTTTTGTGAAACGTATGCATGGTGCTGGAGCAGCATGGAAGAAATCCGCAGGAAGTAATGGAGCTGTGAGGAGACAAGGATTTGATTTGCAGTAG___AGTGAGAGGAACTTTAAATATTTTCCAGAAATCTTGACAAA

Fln Alignment:

Contig9851___RDFAGTPCIPVYVMLPLGIINEKCELVDPETLTKQLRTLKSANVDGVMVDCWWGIVEGDNPQKYNWSGYRELFNILRKTKLKLQVVMSFHECGGNVGDDVNITLPKWIL-EIGKDNPDIFFTDREGRRNKECLTWGIDKERVLRGRTGLEVYFDFMRSFRMEFNDYFEDGLISEIEIGLGPCGELRYPSYPEKHG-WKYPGIGEFQ
A9NVE4______________RDHGG---VPVFVKLPLDSVTSKHTVNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYRELLEMVRKRGLKVQAVMSFHKCGGNVGDSVSIPLPKWVVEEIDRDN-DLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVV-EIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQ

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
231		33	66		0.997452
232	66		33		0.997452
234		33	66		0.997452
235		66	33		0.997452
238	33	66			0.997452
246	66			33	0.997452
247	66		33		0.997452
249		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain