SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9830

Length: 1872 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9830 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	1.0e-08	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Blast2go	regulator of chromosome expressed	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAZ2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is longer than subject: 423 - 390

Fln protein: *KKKERA*KKDVEVRGSWYCDF*RLVKYASGVKSVKPLLALVIVLS*QRLDQVYSFGSNSSGQLGHGTKEEEWRPRLIRSLQGIRIIQATAGAGRTILISDMGRVYAFGKDSFGDSEYGVLGSKYVTTPQLVESLEGIFVVQAAIGNFFTAVLSREGRVYTFSWGVDAKLGHQTDPQDLKPHLLKGVLEDIPVVQIAAGYCYLLALTCQPSGMSVYSVGCGLGGKLGHGCRTDERYPRLIEQFQHLSLQPIVVAAGAWHAAVVGKDGRVCTWGWGRYGCLGHGNEECESVPKAIESLKGIKAVHVATGDYTTFVVADNGDVYSFGCGESSSLGHFDAATENQAQRHENVLHPKLVVSLKKRQEQVVQISLTNSIYWNAHTFALTKLGNLYAFGAGDKGQLGTELLAYQSERGNPERVDIDLN*

Protein Length: 424

Fln nts: TAAAAGAAGAAAGAGAGAGCCTGAAAAAAAGATGTGGAGGTTCGTGGAAGTTGGTATTGCGATTTTTGAAGGCTGGTGAAGTATGCTTCAGGCGTGAAAAGTGTCAAGCCATTGCTGGCCCTGGTCATAGTATTGTCGTAACAAAGACTGGACCAAGTTTATTCATTTGGATCTAACAGTTCTGGGCAGCTAGGTCATGGGACAAAAGAAGAAGAATGGCGGCCAAGGTTAATCAGGTCACTTCAGGGCATTAGAATAATTCAAGCCACTGCAGGGGCCGGTCGAACAATTCTCATCAGCGATATGGGTAGGGTGTATGCATTTGGTAAAGATTCCTTTGGGGACTCTGAGTATGGTGTCCTAGGCTCTAAATATGTCACCACACCACAGCTGGTGGAATCACTGGAGGGTATTTTCGTAGTACAAGCAGCTATTGGTAACTTCTTCACTGCCGTACTTTCTAGAGAAGGCAGAGTATATACATTCTCTTGGGGTGTGGATGCTAAACTTGGCCATCAAACTGACCCACAAGATCTGAAACCACATTTGTTGAAAGGTGTTCTAGAGGATATACCCGTGGTACAAATTGCAGCAGGCTACTGTTATTTGTTAGCTCTTACATGTCAGCCGAGTGGCATGTCGGTATACTCTGTTGGCTGTGGACTTGGAGGAAAGCTTGGACATGGCTGTAGGACAGATGAACGTTATCCTCGGCTAATTGAGCAGTTTCAACACCTGAGCCTTCAGCCTATTGTTGTAGCAGCAGGTGCATGGCATGCTGCTGTTGTAGGTAAGGATGGACGTGTATGCACATGGGGATGGGGTCGATATGGCTGCTTGGGACATGGGAATGAAGAGTGTGAGTCTGTACCCAAGGCAATTGAATCACTGAAAGGGATCAAGGCTGTCCATGTTGCCACAGGTGACTACACAACTTTTGTGGTGGCAGACAATGGGGATGTTTATTCTTTTGGTTGTGGCGAGTCATCAAGCCTTGGGCATTTCGATGCAGCCACGGAGAACCAGGCTCAAAGGCACGAAAATGTCCTACATCCAAAGTTAGTAGTTTCATTGAAAAAGAGACAAGAACAGGTTGTGCAGATCAGTTTAACAAATTCAATCTATTGGAACGCTCATACATTTGCACTGACAAAACTGGGGAATCTCTACGCGTTTGGAGCTGGAGACAAAGGGCAACTTGGGACAGAGCTCCTTGCTTATCAAAGTGAAAGGGGAAATCCCGAACGTGTTGATATTGATTTAAACTAG___AAATAGTCGTGTTCATTCTAAGCCTTGTTAATTCCCTCGAATTGTTTAGAAGCCTGTGTCAACTGTTTCCTCTTGTCTAAAGTGTAAAAAAGCATTTCATCCCTTCCATTTCTCTTCTTCCAATGTACATACCAATTCTATCAGAAACTAACAAAGGTTACTGCCAACTTTCATATAGATAGAAGTTAGAACCAAGATGTGACATTCTTTGCACTCACTGTTATTAGGAGCTAAGTTGTGTTCATGGACTAGTGTACCGGCCAAATTTCCGCACATCCGAGGTGATACTGCAGTATCAACTTAAATTTTAAGCACAGAAAATGAACTTCCAAACTGCTGGTGGGCAAACTAGAATGGCACATGAAGAGTGGTGGGGAGGATTGTTATAGTCGTCTATTGTTGTCAGCGTTGGTATTTTAGGAGGCAGTGCATTGCATTTCATTATTTGAAACTTCATATCCACTTATCTACATGGCTTGACGGTAAGTACAAGAACTATTCAAAGTAGCAGTTCCTCGTGGTATTCTAAATTATAGTTTATAACAAACTCAGGCCAAGCCTAAAAACTTTCTTGTATGCTTTTCTAGTAAGCACACTCATAAA

Fln Alignment:

Contig9830___VKYASGVKSVKPLLALVIVLS*QRLDQVYSFGSNSSGQLGHGTKEEEWRPRLI--------RSLQGIRIIQATAGAGRTILISDMGRVYAFGKD-SFGDSEYGVLGSKYVTTPQLVESLEGIFVVQAAIGNFFTAVLSREGRVYTFSWGVDAKLGHQTDPQDLKPHLLKGVLEDIPVVQIAAGYCYLLALTCQPSGMSVYSVXXXXXXXXXXXCRTDERYPRLIEQFQHLSLQPIXXXXXXXXXXXXGK--DGRVCTWGWGRYGCLGHGNEECESVPKAI
D5AAZ2______________VKALENVKIVQAAIGGWHCLAVDDQGQAYAWGGNEYGQCGEEPERKEDGSKVLRRDIAIPQRCAPQLRVRQVAAGGTHSVVLTHNGHVWTWGQPWPPGD-------IKQISTPVRVQGLENVQLI--AVGAFHNLALLEEGEVWAWGNNEYGQLGTGDTQPRSQPVPVQG-LSGLILADIAAGGWHSTALT---TDAEVYAWGRGEHGRLGFG---DDKSSKMVPQKVHLLAGETIAQVSCGGTHSVARTADGRIFSYGRADHGRLGYGRKVTTGHPMEV

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
183		50		50	1.0
291			50	50	1.0
345	16		83		0.994512
346		83	16		0.994512
347		83		16	0.994512
349	16		83		0.994512
350		16		83	0.994512
352		83	16		0.994512
353	83	16			0.994512
355	16			83	0.994512
358			16	83	0.994512
359		83		16	0.994512
362		16		83	0.994512
365	66		16		0.988813
366		83		16	0.994512
370	80		20		0.995493
372		20		80	0.995493
373	20			80	0.995493
376		80	20		0.995493
380			20	80	0.995493
382	80	20			0.995493
383			20	80	0.995493
384	75		25		0.996473
391	75		25		0.996473
1697	16	83			0.994512
1724		50	50		1.0
1727	50	50			1.0
1731		50		50	1.0
1733	50			50	1.0
1734	50			50	1.0
1735			50	50	1.0
1738		50		50	1.0
1741		50	50		1.0
1744	50		50		1.0
1783	25			75	0.996473
1786		75		25	0.996473
1787			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain