SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9829

Length: 1226 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9829

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 subgroup RHE protein [Populus tremula x Populus alba]	-	-	4.0e-17	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	ring-h2 finger protein atl3c	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P249

Fln msg:

Fln protein: MSSVSETHEPPQYGSAQGYAISGKIMLSAIICLFLVVLLVFLLHLYARWIWRHSARFSRRNRRRSASRRRRLRFSGQVPASLQNTGLDSSILQTLPMFVYKSQDFIDGLECAVCLCELEENEKARLLPNCKHGFHVECIDMWFRSHSTCPVCRTSAKPESLVSDSAKIEAQVSITISGPIPSEIHDNSEQVQSARFGEECNPPNRQKQMNGETDQGTSGGRNAPQIGIEIPKGPDGLSFPGEGCQLCSPNGSQSSSKSPVTLLRSLTRMLSRDTERIQVFPTEHPGEPDVENNGTDQNP*

Protein Length: 301

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTGATTCATTGAAGGCTGCAGCCACAGAATGAGCTAGTAGTGCTCTGCCATTTTTGCAGAGCAGGCTATCAAATAATTTGAGGGCCGAGGCCAACCCCATTTGAAAGGAAATTTCTGTGACTTCAAG_-_ATGAGTTCGGTTAGCGAAACCCATGAACCGCCTCAGTATGGGAGCGCTCAGGGTTATGCCATCAGTGGCAAAATCATGTTGTCGGCAATAATATGTCTTTTTCTTGTGGTGTTGCTCGTGTTTTTGCTGCACCTTTATGCCAGATGGATTTGGCGACACTCTGCTAGGTTTTCCCGACGGAATCGACGCAGATCAGCTTCTAGGCGTCGCCGGCTTCGTTTCTCGGGACAAGTACCGGCGAGTCTCCAGAATACGGGGTTGGATTCTTCGATTTTACAGACTCTGCCCATGTTTGTGTATAAATCCCAAGATTTCATCGACGGTCTGGAGTGCGCAGTTTGTCTGTGCGAGTTGGAGGAGAATGAGAAAGCCCGGCTTCTGCCAAATTGCAAGCATGGTTTTCATGTCGAGTGTATTGACATGTGGTTTCGTTCGCATAGCACTTGTCCCGTTTGCAGAACCAGCGCCAAACCCGAATCACTTGTTTCCGACTCCGCTAAAATAGAGGCGCAGGTTTCGATTACAATCTCAGGGCCAATTCCTTCAGAGATCCATGACAATTCTGAACAAGTGCAGTCTGCAAGATTTGGGGAAGAATGTAATCCGCCAAATCGGCAGAAGCAGATGAATGGGGAGACCGATCAGGGAACTTCGGGTGGAAGAAATGCGCCTCAGATTGGCATTGAAATACCCAAAGGGCCCGATGGGTTATCGTTTCCTGGCGAAGGCTGTCAGCTTTGTTCGCCAAATGGTTCGCAGTCGTCATCGAAATCTCCCGTTACTCTCCTCCGCTCGCTGACAAGGATGTTGAGCAGAGACACAGAGAGGATTCAGGTCTTCCCAACTGAGCATCCCGGGGAACCTGATGTTGAAAATAATGGTACGGACCAGAACCCATAG___AGTATGGCAACCGTAATCGATCGTGTAAATATAGATGTAGATTTCTTACCGTTATCAGATTGTTTGGGATTCATCCAATTATGGTGTATCGCCATATTTCTTCTGTAACGGATCCCACAAAATATCTTCGAAATCAGATACTGAAATTTTTTTCTGCTCAATTATTCTTG

Fln Alignment:

Contig9829___MSSVSETHEPPQYGSAQGYAISGKIMLSAIICXXXXXXXXXXXXXYARWIWXXXXXXXXXXXXXXXXXXXXXXXXGQVPASLQNTGLDSSILQTLPMFVYKSQDFIDGXXXXXXXXXXXXXXKARLLPNCKHGFHVECIDMWFRSHSTCPVCRTSAKPESLVSDSAKIEAQVSITISGPIPSEIHDNS--EQVQSARFGEECN--------PPNRQKQMNGETDQGTSGGRNA--PQIGIEIPKGPDGLSFPGEGCQLCXXXXXXXXXXXPVXXXXXXXXXXXXDTERIQVFPTE
A9P249______________MSLGSDLNEPLPEEREPKYLINGKIMILAVICLLLVAALVFLLHVYARWIWRESSRISRRTRRRSASTRRRFSFTGREPARLLNVGLDSKILETLPMFLYKSQNFTDGLDCAVCLCEFEDNEKARLLPNCGHSFHVECIDMWFRSHSTCPVCRTGAQPEQPVLESARVE-QVSVTIPGPITSGFHDNPNLEQDQTAGCGEDYNLQNATNIFPWGRQKQMKTEMDEGTSGGGRALMPQIAIDIPKRPDGFS-SGEGHQFQSPNGSQSSSKSPIPRLRSFTRMLSRDTEK-KVLPAD

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
156	14		85		0.993533
332	71		28		1.0
438		10		90	0.90298
486	12		87		0.992554
489		87	12		0.992554
596		80	20		0.995493
610		28		71	1.0
613	71			28	1.0
620			66	33	1.0
621		66		33	1.0
623		66	33		1.0
625	66			33	1.0
626	66		33		1.0
627	66			33	1.0
629	33	66			1.0
631			66	33	1.0
632	66	33			1.0
636	83		16		0.994512
649			16	83	0.994512
650		83		16	0.994512
653		83		16	0.994512
654			16	83	0.994512
656	83	16			0.994512
657	83	16			0.994512
658	83			16	0.994512
660	83		16		0.994512
662	83			16	0.994512
664			83	16	0.994512
666	14		85		0.993533
668	57			28	1.0
669		28	71		1.0
670	14		85		0.993533
672			14	85	0.993533
673	14			85	0.993533
675		14	85		0.993533
676	85			14	0.993533
678			14	85	0.993533
679	85		14		0.993533
681	85			14	0.993533
682	85		14		0.993533
689			87	12	0.992554
691	12	87			0.992554
693	87	12			0.992554
694	87			12	0.992554
696			12	87	0.992554
697		87	12		0.992554
703		12	87		0.992554
704	87			12	0.992554
705		12	87		0.992554
831			80	20	0.999996
871		12		81	0.999943
872			12	87	0.999964
875		87	12		0.999964
878	12		87		0.999964
880		12	87		0.999964
881	87			12	0.999964
882	87			12	0.999964
1207		20		80	0.995493
1208			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain