SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9821

Length: 396 nt

UniGene Fasta

>sp_v2.0_unigene9821
CGTCGTGACCTTGGCTGTCACTCATGTTCGAGTGTATGGTAGTGTTGCCTACTTGGCACAAACAGCTTGGATTCAGAGTGGGACTCTCAAAGATAACATATTCTACGGGAAAAAATGGGACAAAATTCAGTACATGAAGGCAATAAAAGATTGTACATTAGACCAGGATATAGAGAGCTTTGCTTCAAGACTCAAATGGTTGTCTTTGGTAACAAAGGTTTAATGGGTCTCGTTCTGTTGTTTGTTTTAAGTTCATAGTCTTGTTTTCTAGTTGTAAACCGTGCAACTGCTCCATATACAGTAAGCCTAACGAGTTATTTCGTGTTTAGTTTAAGGAAGCTTGTTACCAGGTGCAGTGTGAATTAAGGTTAATATGCCAGGAGATACATTAGAATT

Ace file of the UniGene sp_v2.0_unigene9821

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	multidrug resistance protein associated1 [Zea mays] gb\|AAO72315.1\| multidrug resistance associated protein 1 [Zea mays] gb\|AAO72316.1\| multidrug resistance associated protein 1 [Zea mays]	-	-	5.0e-12	61%
FL-Next	Isoform 2 of ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8	-	-	0.0	55%
Blast2go	abc transporter c family member 8-like	-	-	1.82258e-14	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	1.82258e-14	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	1.82258e-14	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.82258e-14	80%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	1.82258e-14	80%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	1.82258e-14	80%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	1.82258e-14	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	1.82258e-14	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	1.82258e-14	80%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	1.82258e-14	80%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.82258e-14	80%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LGU1-2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 673 aas, your sequence is shorter than subject: 74 - 1453

Fln protein: VVTLAVTHVRVYGSVAYLAQTAWIQSGTLKDNIFYGKKWDKIQYMKAIKDCTLDQDIESFASRLKWLSLVTKV*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCGAGTGTATGGTAGTGTTGCCTACTTGGCACAAACAGCTTGGATTCAGAGTGGGACTCTCAAAGATAACATATTCTACGGGAAAAAATGGGACAAAATTCAGTACATGAAGGCAATAAAAGATTGTACATTAGACCAGGATATAGAGAGCTTTGCTTCAAGACTCAAATGGTTGTCTTTGGTAACAAAGGTTTAATGGGTCTCGTTCTGTTGTTTGTTTTAAGTTCATAGTCTTGTTTTCTAGTTGTAAACCGTGCAACTGCTCCATATACAGTAAGCCTAACGAGTTATTTCGTGTTTAGTTTAAGGAAGCTTGTTACCAGGTGCAGTGTGAATTAAGGTTAATATGCCAGGAGATACATTAGAATT

Fln Alignment:

Contig9821___VRVYGSVAYLAQTAWIQSGTLKDNIFYGKKWDKIQYMKAIKDCTLDQDIESF
Q8LGU1-2____________VKVFGSIAYVSQTSWIQSGTIRDNILYGKPMESRRYNAAIKACALDKDMNGF

SNPs (tot: 5)

Position	A %	C %	T %	Probability
137	66	33		0.997452
158	20		80	0.995493
205		50	50	1.0
254		50	50	1.0
307		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain