SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9723

Length: 1144 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9723

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-N-acetylglucosamine transporter-like protein [Arabidopsis thaliana] gb\|AAF79647.1\|AC025416_21 F5O11.33 [Arabidopsis thaliana] gb\|AAF88097.1\|AC025417_25 T12C24.13 [Arabidopsis thaliana] gb\|AAV68813.1\| hypothetical protein AT1G12600 [Arabidopsis thalian	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	adenosine 3 -phospho 5 -phosphosulfate transporter	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	0.0	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	UAA transporter	IPR013657	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg: Distance to subject end: 18 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 255 - 329

Fln protein: MENIRKPLCSTDVVTLAVTQSLIFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVEEYISAVLLVLGLIIFTLADAQTSPNFSICGVFMVCGALILDAFLGNLQEAIFTMNPTTTQMEMLFCSTAVGLPFLIPPMILTGELFTAWGSCLQHPCIYVVLIFAVMATFVGQLSVLCLIAIFGAATTAMVAYQLPYF*ILT*I*PCLFFRGFFDDS*ILQVTTARKAFTLLLSYLIFTKPMTEKHATGLLLIAMGI

Protein Length: 256

Fln nts: ACTAATTCTGCAGCTGGATTCCTTACAAGTATTGCGAGGAAGAGAGCTCAATTCAAATTTCCCAAAACGAAAGGAAAATTTGCTGATTCCCCCTTTAGTCTGTAATTAGATTCAGACCATGGGTGGAGTAAATTTAAGCAATGGCAATCAGGGAATGAGCCTGTTGGGTATAAAGTTAGCAGGAAAGCCCAGATGGTTTCAACTCCTCCTCTGCGCTGGAGGATTCTTTCTTGGGTATTTGGTGAATGGAATCTGTGAGGAATACCTGTATAACAGACTCAAATTCAGCTATGGGTGGTATTTCACTTTTGTACAAGGCTTTCTGTATATTGGGCTTATATATCTCAATGGCTTCCGACTGAAGCACATCTTGAATCC_-_ATGGAAAACATACGTAAGCCTCTCTGCAGTACTGACGTCGTGACCTTGGCTGTCACTCAATCTCTAATATTTCTCAACTATCCTGCCCAAATCATGTTCAAGTCTACCAAGGTTTTACCTGTGATGATTATGGGGGCCTTCATACCAGGCTTAAGAAGGAAATATCCAGTGGAGGAATATATCTCAGCTGTATTGCTTGTGCTGGGTTTGATAATCTTCACACTCGCAGATGCCCAAACATCTCCAAATTTCAGTATATGCGGAGTTTTCATGGTGTGTGGGGCTCTGATTTTGGATGCCTTTCTGGGCAACCTTCAAGAGGCCATATTCACCATGAATCCCACTACTACACAAATGGAGATGTTGTTCTGCTCCACTGCTGTAGGGCTACCATTCTTGATTCCTCCCATGATTTTGACTGGAGAGCTCTTCACAGCCTGGGGCTCCTGCCTACAACACCCTTGCATTTACGTTGTGTTGATATTTGCTGTCATGGCCACCTTTGTAGGCCAGCTGTCTGTTTTATGTTTAATAGCAATCTTCGGAGCTGCTACAACTGCCATGGTTGCTTACCAGTTACCCTATTTCTGAATTCTTACCTAAATTTAACCTTGCTTATTCTTTAGAGGTTTCTTTGATGATAGTTGAATTCTGCAGGTCACAACAGCAAGAAAGGCGTTTACATTGCTCCTATCATATCTCATATTCACGAAGCCAATGACTGAGAAACATGCAACTGGGTTGCTTCTAATAGCCATGGGAATCG

Fln Alignment:

Contig9723___QSLIFLNYPAQIMFKSTKVLPVMIMGAFIPGLRRKYPVEEYISAVLLVLGLIIFTLADAQTS-------PNFSICGVFMVCGALILDAFLGNLQEAIFTMNPTTTQMEMLFCSTAVGLPFLIPPMIL--TGELFTAWGSCLQHP-CIYVVLIFAVMATFVGQLSVLCLIAIFGAATTAMVAYQLPYF*ILT*I*PCLFFRGFFDDS*ILQVTTARKAFTLLLSYLIFTKPMTEKHATGLLLIAMGI
A9NRK5______________QALKYISYPAQVLVKSSKMIPVMLVGALFYGI--KYTVPEYICTFLVASGVSLFALSKSSSKTVSKLAHPN-APWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIYSFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGA-IGQNFIFMTISLFGSLANT-------------------------------TITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
86	66	33			0.997452
87			33	66	0.997452
90		33	33		0.997753
91		66		33	0.997452
92		66	33		0.997452
93	33	66			0.997452
95		33		66	0.997452
100			33	66	0.997452
105	66	33			0.997452
107		33		66	0.997452
109	66	33			0.997452
110	33		66		0.997452
220		33	66		0.997452
616	66		33		1.0
678			85	14	0.993533
698	83		16		0.994512
896	66		33		0.997452
897			66	33	0.997452
902	33			66	0.997452
905		33	66		0.997452
908			33	66	0.997452
909			33	66	0.997452
910	66	33			0.997452
915		33		66	0.997452
917	66	33			0.997452
919	66	33			0.997452
920	33		66		0.997452
975	33		66		0.997452
996		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain