SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9720

Length: 794 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9720 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OTU-like cysteine protease-like [Oryza sativa Japonica Group] dbj\|BAD23097.1\| OTU-like cysteine protease-like [Oryza sativa Japonica Group] dbj\|BAG91428.1\| unnamed protein product [Oryza sativa Japonica Group] dbj\|BAG99627.1\| unnamed protein product [Oryz	-	-	1.0e-26	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	1.1597e-32	89%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Ovarian tumour, otubain	IPR003323	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
484			11	88	0.923564
488	88			11	0.923564
491	11			88	0.923564
492			11	88	0.923564
497			11	88	0.923564
498	88		11		0.923564
503	87	12			0.992554
504			12	87	0.992554
597	12			87	0.992554
601		87		12	0.992554
740		66		33	0.997452
741	66		33		0.997452
742	33			66	0.997452
746	33			66	0.997452
748	33		66		0.997452
749		66	33		0.997452
752	33	66			0.997452
754			33	66	0.997452
758	33		66		0.997452
760		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain