SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9708

Length: 1382 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9708 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RM02_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nadp-dependent alkenal double bond reductase p2	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	79%
Blast2go	alcohol dehydrogenase activity, zinc-dependent	GO:0004024	Molecular Function	79%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	79%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNN2

Fln msg:

Fln protein: MGANEVVNQQIILKNYITGLPKESDLEFISSTLTINLEELKKSKAGGQEEVVVVVKNLYLSCDPYMRGRMRDYHKSYIPPFTPGSVIQGFGVAKVILSNHPDFREGDFVSGTIGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFEVCSPKKGEHVFVSAASGAVGQLVGQFAKLMGCYVVGSAGNKQKVDLLKHKLGFDDAFNYKEEHDLDVALKRHFPDGIDIYFDNVGGDMLDAVLGNMKVHGRIAVCGMIAQTGVQSEQGIKNLYQLVPKRISMKGFLQSDYLHLYPQFLESTINFIKEGKIVYIEDIAEGLENAPSALVGLFHGKNVGKQVVRICDE*

Protein Length: 355

Fln nts: ATCGGGACCAATGATATAAAAGGATTCATCTGACCCAGGCTGCCTGCTCTTATCTTGTCACTCAATTTCCTAAAATACTTTCGAAA_-_ATGGGCGCGAATGAAGTTGTGAACCAGCAAATAATATTGAAGAATTACATAACCGGGCTTCCAAAGGAGTCGGACTTGGAATTTATTTCCAGCACGCTGACAATCAACTTGGAGGAGCTGAAGAAATCTAAGGCAGGAGGACAAGAGGAGGTGGTGGTGGTGGTGAAGAATCTGTATTTGTCGTGCGATCCATACATGCGAGGGCGCATGAGGGACTACCACAAATCCTACATACCTCCATTCACCCCTGGATCGGTTATACAAGGATTTGGGGTGGCTAAAGTGATACTCTCAAATCACCCAGACTTCAGAGAGGGTGACTTTGTATCTGGTACTATAGGATGGGAAGAGTACAGCATAATACCAAAAGGGAGTAACTTAACAAAGATCAAATATACAGATGTACCACTTTCGTATTTTGTGGGTGTTTTAGGAATGCCTGGGTTTACTGCTTATGCTGGATTCTTTGAGGTTTGCTCTCCTAAAAAGGGGGAGCATGTTTTTGTCTCTGCGGCTTCAGGAGCTGTTGGCCAGCTTGTTGGGCAGTTTGCAAAGTTGATGGGTTGCTATGTTGTAGGGAGTGCGGGTAATAAACAGAAGGTTGATCTGCTGAAACATAAACTGGGTTTTGATGATGCTTTCAACTATAAGGAGGAGCATGACTTGGATGTGGCTTTAAAAAGGCATTTTCCAGATGGGATCGACATCTATTTCGATAATGTTGGTGGTGATATGCTTGATGCAGTGCTGGGGAATATGAAAGTCCATGGCCGCATTGCTGTTTGTGGTATGATTGCTCAAACTGGTGTTCAGAGTGAACAAGGTATAAAAAACTTGTATCAGCTTGTGCCTAAGCGCATAAGCATGAAAGGTTTCCTTCAGTCTGATTACCTGCACCTATACCCTCAGTTTCTAGAGTCTACAATAAATTTTATTAAAGAAGGGAAGATAGTATACATTGAAGACATTGCTGAAGGCCTTGAAAATGCACCATCAGCTCTTGTGGGGCTTTTCCATGGTAAAAATGTCGGCAAGCAAGTAGTTCGCATTTGTGATGAATGA___TGGAACAGAAACTTTGGAGCTAGGAAGAATGGCAAACTGCTGTTGCACAAGGAGTGCATTGTTGACAAATGCAGCATTTCAGTTTCACTTGTGTGAACCGTAGCCTATGTATTTCATATTCCATTTTTAGTTTTATGATATCCTATTGTGGACATTAAAGGCATGCAAATGTGTTCTTTGCTATTATGGATTTTAGGGCAACTTAAAGGATAATTATTTCGCATGATTACGACC

Fln Alignment:

Contig9708___MGANEVVNQQIILKNYITGLPKESDLEFISSTLTINLEELKKSKAGGQEEVVVVVKNLYLSCDPYMRGRMRDYHKSYIPPFTPGSVIQGFGVAKVILSNHPDFREGDFVSGTIGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFEVCSPKKGEHVFVSAASGAVGQLVGQFAKLMGCYVVGSAGNKQKVDLLKHKLGFDDAFNYKEEHDLDVALKRHFPDGIDIYFDNVGGDMLDAVLGNMKVHGRIAVCGMIAQTGVQSEQGIKNLYQLVPKRISMKGFLQSDYLHLYPQFLESTINFIKEGKIVYIEDIAEGLENAPSALVGLFHGKNVGKQVVRICDE
B8LNN2______________MGANELVNRQIILKNYITGLPKESDLEFISSTLTLNLEELKQSKAG--EDVVVVVKNLYLSCDPYMRGRMRDYHKSYIAPFTLGSVIQGFGVAKVILSNHPDFREGDLVSGITGWEEYSIIPKGSNLTKIKYTDVPLSYFVGVLGMPGFTAYAGFFDVCSPKKGEHVFVSAASGAVGQLVGQFAKSMGCYVVGSAGNKQKIDLLKHKLGFDDAFNYKEEHDLDVALKRYFPDGIDIYFDNVGGDMLDAVLGNMKVHGRIAVCGMIAQSGVQSEQGIKNLYQLVPKRISMKGFLQSDYLHLYSKFLESTINFIKEGKLVYIEDIAEGLENAPSALVGLFHGKNVGKQVVRICDE

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
430		40		60	1.0
558	11	88			0.999937
559	88		11		0.999937
561	11	88			0.999937
562		11	88		0.999937
567			11	88	0.999937
568	88		11		0.999937
573		88	11		0.999937
576		88	11		0.999937
634		90		10	0.90298
635	90		10		0.90298
639		90	10		0.90298
641	10			90	0.90298
646	11	88			0.923564
647	11			88	0.923564
648		88	11		0.923564
649		88	11		0.923564
651		11		88	0.923564
654	88	11			0.923564
656	11			88	0.923564
657		11		88	0.923564
757	33	66			0.997452
758		66	33		0.997452
759		66		33	0.997452
760	66		33		0.997452
764	66		33		0.997452
765		33	66		0.997452
767	33			66	0.997452
770		66		33	0.997452
773	66	33			0.997452
774		66	33		0.997452
859	33		66		0.997452
886		33		66	0.997452
901		66		33	0.997452
931		25		75	0.996473
932	25			75	0.996473
1039		25		75	0.996473
1087		13		86	0.999973
1101			86	13	0.999973
1132		14		85	0.999981
1238			88	11	0.923564
1330	85	14			0.993533
1331	85	14			0.993533
1332		14	85		0.993533
1353	50			50	1.0
1354	50		50		1.0
1356	33		50		1.0
1357	33	16		50	1.0
1359	83	16			0.994512
1361		16	83		0.994512
1363		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1132	1147	CAC CAC CAC CAC CAC C	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain