SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9707

Length: 706 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9707

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	-	-	1.0e-10	20%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	62%
Blast2go	endo- -beta-xylanase a-like	-	-	0.0	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	78%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	78%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	78%
Blast2go	Glycosaminoglycan degradation	00531	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	78%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Carbohydrate-binding, CenC-like	IPR003305	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
178	33		66		1.0
204	12			87	0.992554
205		25		75	1.0
206	85		14		0.993533
207			14	57	1.0
208		14	85		0.993533
209			85	14	0.993533
210		14	85		0.993533
211	14		85		0.993533
238	85		9	4	0.999726
239		4	80	14	1.0
240		9	85	4	0.999726
242	85	4		9	0.999726
243		80	9	4	0.999537
250		4		85	0.999726
251	4			85	0.999726
254		9		90	0.999872
257			90	9	0.999872
258		9	90		0.999872
260		9		90	0.999872
261			90	9	0.999872
262		9	90		0.999872
263	9		90		0.999872
625	87			12	0.992554
627	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain