SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9681

Length: 1594 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9681 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial FAD carrier [Cucumis melo subsp. melo]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2K8

Fln msg:

Fln protein: MGVDFESVTEATSGAIGGIVSTTILYPLDTCKTKYQAEVQAGGRQKYRHLSDVLWEAVSTRQIHSLYQGLGTKNLQSFISQFIYFYSYSYFKRFYLKQSRKKYMGTQANLAVAAAAGACTALITQPLDTASARMQTSAFGKSKGLWQTLSEGSWKEAFDGLGVSLLLTSNPAIQYTVFEQLKQRLLRRQKSNRNDSVKAESSPVVISAFAAFLLGAFSKTIATVLTYPAIRCKVMIQAAEPDKDDALIMNGENRDKPPRHMADALKIIWKNEGPLGFYKGVHAQILKTVLSAALLLMIKEKTSRSTWVVMVGLRRYILAAKEKIKQA*

Protein Length: 329

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTGGCGAGCTTTTTAGTCTTGATTTGATTTGGAATCTCAGTTGTGAGCAACCCAACTTCTTATTGTTGCACCTCCAGCATCAATCATCAATTGTCTGCATTTGCGCTAGGAATGCAAATTTCAAATCGGGTTCTGAATACCTGATTGTATACCCCCACCGTAGACAGATATAGCGCAGATCAGATATCTTATTCGGTGGAATCTTTATGCA_-_ATGGGGGTTGATTTTGAATCTGTGACAGAGGCAACTTCAGGAGCCATAGGAGGGATCGTGAGCACTACGATATTGTATCCCTTAGATACATGTAAGACAAAGTACCAGGCAGAGGTTCAAGCCGGGGGTCGACAGAAATACAGACATCTATCTGATGTGTTGTGGGAGGCTGTTTCCACTAGGCAAATTCATTCTTTGTATCAGGGCCTTGGCACCAAAAATTTACAATCATTCATATCTCAATTTATTTACTTTTATAGCTATAGTTACTTTAAGAGATTTTACTTGAAACAAAGTAGGAAGAAGTATATGGGAACACAGGCAAATTTGGCTGTAGCTGCTGCAGCTGGAGCTTGCACAGCTTTGATAACACAGCCACTGGACACAGCTTCTGCTCGGATGCAAACTAGTGCATTTGGGAAATCAAAAGGACTTTGGCAAACTCTTAGTGAGGGTTCTTGGAAAGAGGCATTCGATGGACTTGGTGTGTCTTTACTTCTGACATCAAATCCTGCTATACAGTATACAGTATTTGAGCAGTTGAAACAGAGGTTGTTGAGGCGACAAAAGAGTAATAGAAATGATTCAGTTAAGGCAGAGTCCTCTCCAGTTGTTATCTCAGCGTTTGCTGCATTCTTGTTGGGTGCATTTTCAAAGACAATAGCAACAGTCCTGACATATCCTGCAATAAGATGCAAGGTTATGATTCAAGCTGCAGAACCAGATAAAGATGACGCATTAATAATGAATGGTGAGAATCGAGATAAACCACCTAGACACATGGCCGACGCTTTGAAAATCATTTGGAAAAACGAGGGCCCTTTAGGTTTCTACAAGGGGGTACATGCCCAAATTTTGAAGACAGTCTTGAGTGCAGCTTTATTATTGATGATCAAAGAGAAAACATCTCGCAGCACTTGGGTTGTGATGGTCGGACTTAGGAGGTATATTTTGGCTGCAAAAGAGAAAATCAAGCAAGCTTGA___TTTCACATTTTGAAGTTCAACAAGTTTTCAAAGATCCAAGTTATTCAATTTTCAATTTCTATACGAAAGGACCAGGTGGATACCAGGCACCAACCAATCCTGTACATATTGACGGATAAAACCAATGACAGTTGTAGTTGCAATCAATTGAAAATTTTTGAACCTGTAAACGCTTGCTTTATATTTTCTTAATTCGAAGTGTAACCAAGCATCAAATATGAACATCTGCCCTTTTTTGGTTTATCTGATTTTATGCAAAATTTAATTAAAATATTGCTGGCAAGCTGTGCTATAAGCAATAAACTTTGAAAATCGCAAGTATATATATATATGTATGCCCTTTTGTCAAGATTTTATGTAATCTAAATTCTA

Fln Alignment:

Contig9681___MGVDFESVTEATSGAIGGIVSTTILYPLDTCKTKYQAEVQAGGRQKYRHLSDVLWEAVSTRQIHSLYQGLGTKNLXXXXXXXXXXXXXXXFKRFYLKQSRKKYMGTQXXXXXXXXXXXXXALITQPLDTASARMQTSAFGKSKGLWQTLSEGSWKEAFDGLGVSLLLTSNPAIQYTVFEQLKQRLLRRQKSNRNDSVKAESSPVVISXXXXXXXXXFSKTIATVLTYPAIRCKVMIQAAEPDKDDALIMNGENRDKPPRHMADALKIIWKNEGPLGFYKGVHAQILKTVLSAALLLMIKEKTSRSTWVVMVGLRRYILAAKEKIKQA
A9P2K8______________MGVDFESVTEATSGAIGGLVSTTILYPLDTCKTKYQAEVHAGDRQKYRHLSDVLREAISTRQIGSLYQGLGTKNLQSFISQFIYFYSYSYFKRFYLKRSRNKYMGTKANLVVAAAAGACTAVITQPLDTASARMQTSAFGKSKGLWQTLTEGSWKEAFDGLGVSLLLTSNPAIQYTVFEQLKQRLLMRQKRSRNDSVTAESSPIVISAFAAFLLGALSKTMATVLTYPAIRCKVMIQAAEPDKDDRLIMNGENRDKPPRHIIDALRIIWKNEGALGFYKGVHAQILKTVLSAALLLMIKEKTSRSTWVVMVGLRSYILAAKQKIKQA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1419			58	41	1.0
1465		36		63	1.0
1495	33		66		1.0
1501		61	38		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
41	53	AT AT AT AT AT AT A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain