SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9659

Length: 529 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9659
CGTCGTGACCTTGGCTGTCACTCATTTGTTTGGTCTGCAAAGTGGCAGGAATGGCACCAATCAAACAGTTCTTATTGGTGTTTATATTGGCGGGGTTGATTGTTTGCATGTCAGCTGAAGATGGAGTTACCAGTAGATATGTACGGAGGCTTCAGGCATCTGTGGATATGCCCATGGACAGTGATGTTTTCCAGGTTCCCCCAGGTTACAATGCTCCTCAACAGGTTCATATCACTCAAGGGGATCTTGTGGGTAGAGCTGTTATTGTGTCATGGGTCACGCCATCAGAGCCTGGATCCAGTACTGTTCTGTATGGCCCCAGAAAACATAAGTACAAGTACAAAGCAAATGGTCATGTGAAGACATATAAGTTCTTTAATTATACATCGGGATATATTCATCACACCACGGTCAAGAGACTAGAGTTTAACACAAAATATTTCTATAAGATTGGAATTGGAAACACAACACGAGAGTTTTCATTCTCAACTCCTCCAAGACCTGGTCCTGACACGGCATACACTTTTGG

Ace file of the UniGene sp_v2.0_unigene9659

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	purple acid phosphatase [Ipomoea batatas]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	purple acid phosphatase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	76%
Blast2go	Riboflavin metabolism	00740		0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	76%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	76%
Blast2go	extracellular region	GO:0005576	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVR5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 321 aas, your sequence is shorter than subject: 175 - 517

Fln protein: S*PWLSLICLVCKVAGMAPIKQFLLVFILAGLIVCMSAEDGVTSRYVRRLQASVDMPMDSDVFQVPPGYNAPQQVHITQGDLVGRAVIVSWVTPSEPGSSTVLYGPRKHKYKYKANGHVKTYKFFNYTSGYIHHTTVKRLEFNTKYFYKIGIGNTTREFSFSTPPRPGPDTAYTF

Protein Length: 176

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTTTGGTCTGCAAAGTGGCAGGAATGGCACCAATCAAACAGTTCTTATTGGTGTTTATATTGGCGGGGTTGATTGTTTGCATGTCAGCTGAAGATGGAGTTACCAGTAGATATGTACGGAGGCTTCAGGCATCTGTGGATATGCCCATGGACAGTGATGTTTTCCAGGTTCCCCCAGGTTACAATGCTCCTCAACAGGTTCATATCACTCAAGGGGATCTTGTGGGTAGAGCTGTTATTGTGTCATGGGTCACGCCATCAGAGCCTGGATCCAGTACTGTTCTGTATGGCCCCAGAAAACATAAGTACAAGTACAAAGCAAATGGTCATGTGAAGACATATAAGTTCTTTAATTATACATCGGGATATATTCATCACACCACGGTCAAGAGACTAGAGTTTAACACAAAATATTTCTATAAGATTGGAATTGGAAACACAACACGAGAGTTTTCATTCTCAACTCCTCCAAGACCTGGTCCTGACACGGCATACACTTTTGG

Fln Alignment:

Contig9659___KQFLLVFILAGLIVC--MSAEDGVTSRYVRRLQASVDMPMDSDVFQVPPGYNAPQQVHITQGDLVGRAVIVSWVTPSEPGSSTVLYGPRKHKYKYKANGHVKTYKFFNYTSGYIHHTTVKRLEFNTKYFYKIGIGNTTREFSFSTPPRPGPDTAYTF
A9NVR5______________RQLRLVSILCTILFSHPRNSNAGVTSSFMRSLMASVDMPLDNEAFSIPKGYNAPEQVHITQGDYEGKAVIVSWVTSAEPGSSEVFYDTVEHNYKYRAKGNITTYTFFNYTSGFIHHCLIIDLEYDTKYYYKIGNESSAREFWFSTPPKIAPDAAYTF

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
280		80		20	0.995493
283	20		80		0.995493
354			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain