SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9656

Length: 1471 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9656 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	82%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ketopantoate reductase ApbA/PanE, C-terminal	IPR013752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPL2

Fln msg: Overlapping hits, possible frame ERROR between 374 and 359,

Fln protein: MAHTLIFPLSNPHFSYINSSSHTSTKFNKSLCSANYPRIRASATMAAVQESVIPSVIIGAGRVGQALQNMGTGKDVIVKRGEKVPExxxxxxxVCTRNDDLDAVLEVTPRPRWEDLVFFQNGMLEPWLQSKDLVNASQVLAYFAVSKLGEAPTDGKTETNPEGLTAASGKWASAIAARLHLAGLSCKVLDKGTFEKSMLEKLIWISAFMLVGARHQGSTVGTVEKEYRNEVVSLIKELASAAADLKKYNL*SRFRREALCLFTNCCSFSNCIERVQMEEWMVLLTLAKSYS*WTA*SMPNSYKLAKRIGCHLVLKCKTTLHYFRFVGLVVRISSSV*

Protein Length: 338

Fln nts: ATGGGGAATTCCCCTCTTTGCAACTTCAGCTCAGTACACCGTCAATCCTACACGTACTCAGAAGGCTTTCAGAGGTCACGGTTTCGACTTCACGACAT_-_ATGGCGCACACACTCATTTTCCCTTTATCGAATCCACATTTTAGCTACATCAACTCTTCCTCTCATACAAGCACCAAATTTAACAAATCTCTCTGCTCTGCGAATTACCCTCGAATCAGGGCTTCGGCAACCATGGCCGCCGTTCAAGAGTCCGTAATTCCGTCTGTGATCATCGGCGCTGGAAGGGTTGGCCAGGCGCTGCAGAACATGGGAACCGGGAAGGATGTAATTGTTAAGCGAGGCGAAAAAGTACCGGAAxxxxxxxxxxxxxxxxxxxxxGTTTGTACAAGAAACGACGATCTGGATGCTGTGCTTGAAGTTACGCCTCGGCCTCGTTGGGAGGATTTGGTATTTTTCCAGAATGGGATGCTGGAGCCTTGGTTGCAGAGCAAAGATTTGGTAAATGCAAGTCAAGTGCTGGCTTATTTTGCTGTTTCCAAACTAGGTGAAGCACCTACAGATGGAAAAACTGAGACAAATCCTGAAGGTCTGACTGCAGCTTCAGGCAAATGGGCATCTGCAATTGCTGCACGTCTGCATTTAGCAGGTCTTTCATGCAAGGTTCTTGACAAAGGCACGTTTGAAAAGTCGATGTTGGAGAAGTTAATATGGATTTCAGCCTTCATGCTAGTTGGAGCTCGCCACCAAGGTTCAACTGTGGGCACAGTGGAGAAGGAATATAGGAATGAGGTAGTCAGCTTGATAAAGGAACTTGCATCCGCTGCTGCTGACTTGAAAAAATATAATCTTTGATCAAGGTTTAGAAGAGAGGCTTTGTGCTTATTCACGAACTGTTGCTCATTTTCCAACTGCATTGAAAGAGTTCAAATGGAGGAATGGATGGTTTTACTCACTCTCGCAAAAAGCTACAGCTAATGGACGGCCTGATCCATGCCCAACTCATACAAGCTGGCTAAAAGAATTGGGTGCCATTTAGTACTGAAATGCAAAACGACCCTTCATTATTTTAGGTTTGTTGGACTTGTGGTTAGAATATCTTCTTCTGTCTGA___ATCATAGCTTTGTCAATTGAAAATTCTCCCAGGGCCAGTTTTGTGTCTTTTTAATGAAAGACATGCGTTGTCAAGACTGTGTTTGAGGCCATTTTATTCCACACGCTTCTTTGCGTGTCACATCATGGCTCTAGAATTAATTTTAGGAAATTCAATTTCACTTGAATCAGGAGCGATATTACAAGCATAGCTGGGATGATGGAACGCTTCCACTTTATAGCTATATTTCTCGAGTCATTTAGAATTTGAATATATTTTATGAATTGGGATTTGATAGGGACAAGCAAAACTTTTCCCGTGTCACCATACATTCATGGACAAAGAAGTCAATATATTTTTTTCCTCGTAATTTCATTACTTATT

Fln Alignment:

Contig9656___MAHTLIFPLSNPHFSYINSSSHTSTKFNKSLCSANYPRIRASATMAAVQESVIPSVIIGAGRVGQALQNMGTGKDVIVKRGEKVPENxxxxxFVCTRNDDLDAVLEVTPRPRWEDLVFFQNGMLEPWLQSKDLVNASQVLAYFAVSKLGEAPTDGKTETNPEGLTXXXXXXXXXXXARLHLAGLSCKVLDKGTFEKSMLEKLIWISAFMLVGARHQGSTVGTVEKEYRNEVVSLIKELASAAADLKKYNL*SRFRREALCLFTNCCS-FSNCIERVQMEE-WMVLLT
B8LPL2______________MAHTLILPSSYPHFRYIPPSSHTNPKFNKSLCSANYPRIRVSAAMAAVQESVIPSVIIGAGRVGQALQNMGTGKDIIVRRGEKVPENxxxxxFVCTRNDDLDAVLEITPRPRWEDLVFFQNGMLEPWLQSKGLVNASQVLAYFAVAKLGEAPIDGKTETNPEGLTACSGKWASAIAARLHLAGLSCKVLDKGNFEKSMLEKLIWISAFMLVGARHQGSTVGTVEKEYRNEVVSLIKELASAAAAEKNIAF-DQGLEERLCAYSRTVAHFPTALKEFKWRNGWFYLLS

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
301	20		80		0.995493
407	80		20		0.999996
409	80		20		0.999996
410	80			20	0.999996
411			20	80	0.999996
413	80	20			0.999996
414	20			80	0.999996
416	80	20			0.999996
418	20		80		0.999996
419	10		90		0.90298
423	20		80		0.999996
424		20		80	0.999996
425			20	80	0.999996
426	20			80	0.999996
427		20		80	0.999996
536		84	15		0.999986
537	16	83			0.999991
538	83		16		0.999991
540			16	83	0.999991
541	16	83			0.999991
543	16			83	0.999991
548			16	83	0.999991
549			16	83	0.999991
551		16	83		0.999991
553	83	16			0.999991
554		83	16		0.999991
555	16			83	0.999991
557			16	83	0.999991
627	88			11	0.923564
628	88			11	0.923564
640		14		85	0.993533
641	14			85	0.993533
645			85	14	0.993533
670		16		83	0.994512
671		16		83	0.994512
684	16			83	0.994512
686		83		16	0.994512
687		83	16		0.994512
737	16		83		0.994512
756			83	16	0.994512
873		12		87	0.992554
874		12	87		0.992554
875	87	12			0.992554
877			87	12	0.992554
915	85	14			0.993533
916		14		85	0.993533
982		50		50	1.0
1176		85	14		0.993533
1241		80		20	0.999996
1258		80		20	0.999996
1294		11		88	0.923564
1315	12		87		0.992554
1317			87	12	0.992554
1318			87	12	0.992554
1348		14	85		0.993533
1349	83	16			0.994512
1350		16		83	0.994512
1352	83			16	0.994512
1370	20		80		0.995493
1372	20		80		0.995493
1373		80		20	0.995493
1374		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain