SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9646

Length: 1038 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Properoxidase n=1 Tax=Picea abies RepID=Q0JW34_PICAB	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	peroxidase 52	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	80%
Blast2go	Methane metabolism	00680	80%
Blast2go	Phenylpropanoid biosynthesis	00940	80%
Blast2go	Biosynthesis of phenylpropanoids	01061	80%
Blast2go	Metabolic pathways	01100	80%
Blast2go	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	hydrogen peroxide catabolic process	GO:0042744	Biological Process	80%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	80%
Blast2go	heme binding	GO:0020037	Molecular Function	80%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	extracellular region	GO:0005576	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU12

Fln msg: your sequence is longer than subject: 285 - 208

Fln protein: MGEHKSYMLFLLLNLSVLLLLQGCDGSVLLDDTSSFTGEKTAVPNKNSARGFGVVDRIKKKLEQACSGVVSCADILAIAARDSVVTLGGPTWTVMLGRRDSRTASLSDANNGIPPPTSDLANLTSNFRAHGLSKREMVALAGAHTIGKARCVNFRGHIYNDSNIDTAYAKSLQDRCPKSGGDNKLSPLDYKTPTKFENNYYKNLVAEKGLLHSDQELFNGVSTDSLVTEYSKNLELFEKEFTAAIIKMGNITPLTGSQGEIRENCRKRNSDSAIFHFQHASDTQ*

Protein Length: 286

Fln nts: _-_ATGGGAGAGCATAAAAGTTATATGTTATTCTTATTACTAAATTTAAGCGTTCTTCTCCTCTTGCAGGGTTGTGATGGGTCTGTTCTTCTGGACGATACCTCGAGTTTTACAGGTGAAAAAACAGCAGTTCCCAATAAGAATTCCGCCAGAGGTTTTGGGGTCGTTGATAGAATAAAGAAGAAGCTGGAGCAGGCTTGCAGCGGCGTCGTATCATGTGCTGACATTTTGGCAATTGCTGCTCGCGATTCTGTTGTAACGTTGGGAGGTCCTACATGGACAGTGATGCTGGGAAGAAGAGATTCCAGGACCGCAAGTCTAAGTGATGCCAACAACGGTATTCCCCCTCCCACTTCTGACCTTGCCAATCTCACCTCCAATTTTCGAGCTCATGGACTTTCTAAACGGGAAATGGTTGCACTTGCAGGTGCTCACACCATTGGTAAAGCGCGTTGCGTGAACTTCAGAGGTCACATATACAATGATTCAAACATAGACACAGCGTACGCCAAGTCTTTACAAGACCGCTGCCCCAAGAGTGGAGGCGACAACAAATTGTCGCCACTTGATTACAAAACGCCAACAAAGTTCGAAAACAATTACTACAAAAATTTGGTAGCAGAGAAAGGACTTTTGCACTCCGATCAAGAACTGTTCAATGGAGTGTCTACTGATTCTCTGGTTACTGAGTACAGCAAAAACTTGGAACTTTTCGAGAAAGAATTCACTGCTGCAATTATCAAGATGGGAAATATCACGCCTCTAACTGGTTCCCAAGGAGAGATCCGGGAGAACTGCAGAAAGCGTAACTCAGATAGTGCCATCTTCCATTTCCAGCACGCATCTGATACACAATGA___ATAATTATTATTTCATGAAATGTGGAATGCTCTTATGATATAAATCTTATTGCTTGATCTAGGCCTAATCATATGATGGACAAATGATTGGGAAAATCAATAACGAAATGGTATGGAAATTATATTCTTATCTGTATGCACAAATGATTGGGAAAATCAATAACGAAATGGTATGGAAATTAT

Fln Alignment:

Contig9646___LEQACSGVVSCADILAIAARDSVVTLGGPTWTVMLGRRDSRTASLSDANNGIPPPTSDLANLTSNFRAHGLSKREMVALAGAHTIGKARCVNFRGHIYNDSNIDTAYAKSLQDRCPKSGGDNKLSPLDYKTPTKFENNYYKNLVAEKGLLHSDQELFNGVSTDSLVTEYSKNLELFEKEFTAAIIKMGNITPLTGSQGEIRENCRKRN
A9NU12______________MEKACSGVVSCADILAVAARDSVVTLGGPTWTVMLGRRDSGTANRTAANTNIPAPTANLANLTSKFGAQGLSKREMVVLSGGHTIGKARCTSFRDHIYNDSNIDTAYAKSLQAKCPRSGGDNRLSPLDYQTPTKFENNYYKNLVARKGLLHSDQELFNGVSTDSLVTKYSKNLKLFENDFAAAMIKMGNIMPLTGSQGQIRKNCRKRN

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
430		33		66	0.997452
632		50		50	1.0
640		40		60	1.0
649	40		60		1.0
650		40		60	1.0
652			40	60	1.0
685	40			60	1.0
717	50		50		1.0
721	50	50			1.0
727		22		77	0.999999
728			88	11	0.923564
736			11	88	0.923564
742	12		87		0.992554
780	85		14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain