SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9580

Length: 1613 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9580 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Metalloendopeptidase, putative n=1 Tax=Ricinus communis RepID=B9RBI4_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	peptidase family m48 family protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Metalloendopeptidases.	EC:3.4.24.-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	87%
Blast2go	metalloendopeptidase activity	GO:0004222	Molecular Function	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M48	IPR001915	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ9

Fln msg:

Fln protein: MWGSGNWSAPYPECTAIASRPRFHCQRAHLHNVPFSSSFPRNLNCCVFFLPYPHDDSMIKVRPKRKQGCRIAPQRQGKCRAAVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKMLLGPVSEQVMLLENIGTSVRVTENQLSDLHQLMVEAANILRIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTPKELQAVLGHELGHLKCDHGIWLTFANILALGAYSIPGLGAFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSSPLGWYLRNAQTRQLSHPLPVMRAREVDQWARSPQYKALLGRASAFLLKSKPPPS*

Protein Length: 365

Fln nts: ATGGGAAGTTTAATCAGAAAGACAAATTTGTTCTGAAGTTATAGTCCGGTTCCTGGTGCTGAAGGTATAGGCCGGTTCGACGAAC_-_ATGTGGGGGAGCGGGAATTGGAGCGCCCCTTACCCTGAATGTACTGCAATTGCAAGCAGACCTCGGTTTCACTGCCAGAGAGCTCACCTGCACAATGTTCCATTTTCATCATCATTCCCCAGGAATCTTAATTGTTGCGTCTTCTTCCTCCCGTATCCGCATGATGATTCCATGATCAAGGTGCGGCCTAAGAGAAAGCAGGGTTGCAGAATAGCTCCGCAGAGGCAGGGGAAGTGTCGGGCAGCTGTCAGTTTTCCTAATCTTCAAGCGGATGACTTTAGGCATCCTCTTGATAGACAGAATACGGCACTTCTCAGAGCTGTTCCAGGCTTGAATGAATTTGGCAAGATGTTGTTGGGGCCTGTTTCAGAACAAGTTATGCTTCTGGAGAATATAGGAACGTCAGTGCGTGTGACTGAGAATCAGCTTTCTGATCTACATCAATTAATGGTTGAAGCAGCAAATATTCTGCGTATCGAGGTACCTGACCTCTATGTCCGTCAGAATCCTGTCCCTAATGCATATACCCTGGCAATAGGAGGGCGAAAGCCATTTGTTGTTGTGCATACTAGCATTGTGGAGCTTCTTACCCCTAAAGAATTGCAGGCAGTGCTAGGGCATGAATTGGGACATCTGAAGTGTGATCATGGCATCTGGCTCACTTTTGCAAACATACTTGCACTGGGTGCTTACTCCATTCCTGGGCTAGGGGCTTTTATTGCCCAGACATTTGAAGAGCAGTTATTTCGGTGGGTGCGAGCAGCAGAACTGACATGTGACAGGGCTGCTCTTCTTGTAGTGCAGGATCCAAAAGTGGTAATCTCGGTATTAATGAAATTGGCGGGAGGGTGTCCATCTTTAGCAGGGCAGCTGAATGTGGATGCATTTCTAGAACAAGCTCGCTCTTATGATGCTGCATCTTCAAGTCCTCTGGGATGGTATCTAAGAAATGCTCAGACGCGGCAACTGTCCCACCCATTGCCTGTTATGCGTGCCCGAGAAGTAGATCAGTGGGCCAGAAGCCCACAATACAAGGCTCTCTTGGGGCGTGCTTCTGCATTCCTCTTGAAATCCAAACCCCCTCCAAGTTGA___ACTTAGTGAACTGAGGATATTGGAAGTATTGTACGTTATAACAAAACAGTAGTTACATAGCCAGCCTTTGAAGAGGCCCTTTTCTACTATTTTCAATGACAGTAAGCAATACTCATATTATCAAGGGCTCTACTGTAATGTATGATATCAATAGTGGAAAAAGAAATTATCTGTTATCATCAACACGGAGGACATTTAAGCAGCCATTGCTACATAGCTTCCATACTGTGCTATATAAAATATTAGAGGCATATTAGCGTACGGGAGTGAAAATTGGAAGTTTATACCAGCCTGCATGATGTGCATAATGTAAATCATGATCATCTAACTGTTGGTTGTCATTTGAGAGTCTACTGCATACCTTTATTCATTTCGTTTCCTCCCTCGCGAAATATAAGTATTTGAGATTAACTTTGATTAAACAATTCAGTCAGTC

Fln Alignment:

Contig9580___MWGSGNWSAPYPECTAIASRPRFHCQRAHLHNVPFSSSFPRNLNCCVFFLPYPHDDSMIKVRPKRKQGCRIAPQRQGKCRAAVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKMLLGPVSEQVMLLENIGTSVRVTENQLSDLHQLMVEAANILRIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTPKELQAVLGHELGHLKCDHGIWLTFANILALGAYSIPGLGAFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSSPLGWYLRNAQTRQLSHPLPVMRAREVDQWARSPQYKALLGRASAFLLKSKP
B8LKZ9______________MWGSGNWSAPHPECIGIASSPRSQCQRAHLHDVSFSSSYPRNRNCRVFSLPYPHNDSMMKVRPKRKQGCRKAPQRQWKCRAVVSFPNLQADDFRHPLDRQNTALLRAVPGLNEFGKILLGPVSEQVMLLENIGTSVHVTENQLSDLHQLMVEAANILCIEVPDLYVRQNPVPNAYTLAIGGRKPFVVVHTSIVELLTRRELQAVLAHELGHLKCDHGIWLTFANILTLGAYTIPGLGSFIAQTFEEQLFRWVRAAELTCDRAALLVVQDPKVVISVLMKLAGGCPSLAGQLNVDAFLEQARSYDAASSNPLGWYLRNAQTRQLSHPLPVLRAREVDQWARNPQYKALLKRASAFHSKSKP

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
155		25		75	0.996473
1086	20	80			0.995493
1089			20	80	0.995493
1090	80			20	0.995493
1114	16			83	0.994512
1116		83	16		0.994512
1251	90		10		0.90298
1273	88	11			0.923564
1274		11	88		0.923564
1306		77		22	0.999999
1476			40	60	1.0
1580	25			75	1.0
1582	62	37			1.0
1585		33		66	0.997452
1587	66	33			0.997452
1588		33	66		0.997452
1590	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain