SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9549

Length: 2553 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9549
CGTCGTGACCTTGGCTGTCACTCATTCTGGAGATTATTGTTGACTAGATCTCTTTTCGCTTCTGCTCCTTTCTCTGTGATTTCTCCCGCCCCTTCGTTCTCCATGCGCTTTTGAACCTGCCTAAGCACGTGAAGTTCTGCTCTCTATTGCGGACAGCGACGTTTTGCTGGCAGGTCGCAAGTTCAAGTCCAGGGGATAGCAAAGCTAGGAGCACTTCTCAAGCAGAACAAACATGTACAACGATTGCATCTTCTGACAATAAAGATTCTGAACTTGATTTCATCGATCCATTCGGAGTTGGAAGGCAAGGGAAGCTGTGGAGTATGGGAGAAAGTAAGAATGTAATGGGGCAGATTTGGCAACTGCTTATTATAGTGATCTTACTTTTCTCAACTTCGCCAAAAGTTGGAGCTTCAGATCAGCCTCTTTCCAAAATTGAAATTCAGAAGACTACTGTTGCTCTTCACAGTTCTGCTCACATTGAAGTCACTCCCAATCTTCTTGGCATCAAGGGTGAAACAGTTGAGTGGGTGACTGTAAAATTCAACCACCCTTCTCCATCAGCAAGTGATTGGATTGGAGTTTTCTCTCCAGCAAAATTCAATGGCTCTGTATGTTCACCAGAAAGTGGACCAGAGAGCGATCAGGTTCCATACTTATGCACCGCACCAATAAAGTTCCAATATGCAAATTTTTCAGCACACAACTATGTTCGGATAGGAAATGGATCGTTGAAGCTTCAATTGATAAATCAACGAGCTGACTTTGCCTTTGCATTGTTTACGGGTGGACTTTCTAATCCTGTGTTGTTGGCAATTTCAAATACTGTCAGATTTGTGGATCCAAAGTCTCCAGTTTATCCACGCATTGCTCAGGGAAAATCTTGGGATGAAATGGTGGTTACATGGACAAGTGGTTATGGAATTGAGGAAGCGACACCTATTGTTCAGTGGGGTCCTCAAGGAGAGGAGTCAAAATTTTTGTCCCCAGCTGGGACGTTGACATTCGGTCGTAACAGCATGTGTGGTGCACCTGCTCGTACTGTTGGCTGGCGTGACCCTGGTTTTATACACACGAGTTTTCTAAATGACTTATGGCCAAACATGAAATATTATTACAGAGTTGGTCATAGGCTATTCAACGGTTCATATGTCTGGGGAAAAGTAAATTTATTTACATCATCTCCATATCCTGGACAAGATTCTCTACAACGTGTGATTATTTTTGGGGACATGGGGAAGGCAGAACGTGATGGGTCTAATGAGTATAATAACTTCCAGCCCGGGTCTCTTAACACTACTGATAGGCTAGTTGAGGACTTGGAGAATATTGACATAGTTTTCCATATTGGAGACATTGTTTATGCAAATGGATACATCTCTCAATGGGATCAATTTACATCACAAATAGAGCCTATTGCTTCACATGTTCCTTACATGATAGCCAGTGGAAACCATGAACGTGATTGGCCAAATACAGGTTCTTTCTATAAGAACCTTGATTCAGGTGGAGAATGTGGTGTCCCAGCTCAAACCATGTTTTATGTGCCTACAAATAACAGGGACAAGTTTTGGTACTCTACCGACTATGGCATGTTCCATTTCTGTATTGCTGATTCAGAACATGATTGGCGAGAGGGAACAGAGCAATACAAGTTCATCGAGGAATGTTTTGCATCTGCCGATAGACAGAAGCAGCCCTGGCTTATCTTTATTGCCCATCGTGTTCTAGGCTACTCCTCAGCCTCCTGGTACGCGGAAGAGGGAGCATTTGAAGAGCCTATGGGGAGAGAGATGCTGCAAAAGCTCTGGCAGAAGTATAAAGTGGACCTTGCCTTTTATGGCCATGTTCACAATTATGAGCGAACATGTCCCATCTATGAGAACATATGTGTGAGTTCTGAAAGGTCTCACTATTCTGGTACGTTCAATGCAACCATACACGTAGTGGTTGGTGGGGGAGGTTGTGCCCTAGCTGATTATACTACTCTACAAACCAGTTGGAGTTATTTCAAGGACCATGATTATGGATTTGTTAAGCTCACGGCTTTTAATCATTCTTCTTTGCTGCTCGAGTACAAGAAAAGTTCAGATGGGAAAGTTTATGATCAGTTTTGGATAACAAGAGAGTACAGGGATATTCTCGGATGTGATACCATTGGCAACTGCCCCTCTACTACCTTAGCTTCATAAATTGGGATACTCATAATAATAATAAAATTAAAAGAATATTATGCCCCTGGGGTATTTTGGGACATTCGTTCCACACTTATTGTGGATTTGGTGGAAAGATGGGTTCAGTCTTGTTTGACTTCACTGTCAAAGTTATATGGTTTCTCATATGAAGATTACAAGGTCCTACCATGTTCAAAGATTTTATGTGTCTCCATCCAAGTGTGGTTACATTAAATTATTCATTCATTCCCTTCTATCTAATGAATAAAATGCAATTCTTATATGTCAAATTAATGCAATTGTTATGTTCAATTTGGGTGAACATGAAATCAGATGTAATCATACACAGAATAGAATGGAACAGTTAGTATTACCAGAC

Ace file of the UniGene sp_v2.0_unigene9549

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, putative n=1 Tax=Ricinus communis RepID=B9RED8_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	probable inactive purple acid phosphatase 1-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	82%
Blast2go	Riboflavin metabolism	00740		0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	0.0	82%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ97

Fln msg: your sequence is shorter than subject: 623 - 641

Fln protein: MGESKNVMGQIWQLLIIVILLFSTSPKVGASDQPLSKIEIQKTTVALHSSAHIEVTPNLLGIKGETVEWVTVKFNHPSPSASDWIGVFSPAKFNGSVCSPESGPESDQVPYLCTAPIKFQYANFSAHNYVRIGNGSLKLQLINQRADFAFALFTGGLSNPVLLAISNTVRFVDPKSPVYPRIAQGKSWDEMVVTWTSGYGIEEATPIVQWGPQGEESKFLSPAGTLTFGRNSMCGAPARTVGWRDPGFIHTSFLNDLWPNMKYYYRVGHRLFNGSYVWGKVNLFTSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNNFQPGSLNTTDRLVEDLENIDIVFHIGDIVYANGYISQWDQFTSQIEPIASHVPYMIASGNHERDWPNTGSFYKNLDSGGECGVPAQTMFYVPTNNRDKFWYSTDYGMFHFCIADSEHDWREGTEQYKFIEECFASADRQKQPWLIFIAHRVLGYSSASWYAEEGAFEEPMGREMLQKLWQKYKVDLAFYGHVHNYERTCPIYENICVSSERSHYSGTFNATIHVVVGGGGCALADYTTLQTSWSYFKDHDYGFVKLTAFNHSSLLLEYKKSSDGKVYDQFWITREYRDILGCDTIGNCPSTTLAS*

Protein Length: 624

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTGGAGATTATTGTTGACTAGATCTCTTTTCGCTTCTGCTCCTTTCTCTGTGATTTCTCCCGCCCCTTCGTTCTCCATGCGCTTTTGAACCTGCCTAAGCACGTGAAGTTCTGCTCTCTATTGCGGACAGCGACGTTTTGCTGGCAGGTCGCAAGTTCAAGTCCAGGGGATAGCAAAGCTAGGAGCACTTCTCAAGCAGAACAAACATGTACAACGATTGCATCTTCTGACAATAAAGATTCTGAACTTGATTTCATCGATCCATTCGGAGTTGGAAGGCAAGGGAAGCTGTGGAGT_-_ATGGGAGAAAGTAAGAATGTAATGGGGCAGATTTGGCAACTGCTTATTATAGTGATCTTACTTTTCTCAACTTCGCCAAAAGTTGGAGCTTCAGATCAGCCTCTTTCCAAAATTGAAATTCAGAAGACTACTGTTGCTCTTCACAGTTCTGCTCACATTGAAGTCACTCCCAATCTTCTTGGCATCAAGGGTGAAACAGTTGAGTGGGTGACTGTAAAATTCAACCACCCTTCTCCATCAGCAAGTGATTGGATTGGAGTTTTCTCTCCAGCAAAATTCAATGGCTCTGTATGTTCACCAGAAAGTGGACCAGAGAGCGATCAGGTTCCATACTTATGCACCGCACCAATAAAGTTCCAATATGCAAATTTTTCAGCACACAACTATGTTCGGATAGGAAATGGATCGTTGAAGCTTCAATTGATAAATCAACGAGCTGACTTTGCCTTTGCATTGTTTACGGGTGGACTTTCTAATCCTGTGTTGTTGGCAATTTCAAATACTGTCAGATTTGTGGATCCAAAGTCTCCAGTTTATCCACGCATTGCTCAGGGAAAATCTTGGGATGAAATGGTGGTTACATGGACAAGTGGTTATGGAATTGAGGAAGCGACACCTATTGTTCAGTGGGGTCCTCAAGGAGAGGAGTCAAAATTTTTGTCCCCAGCTGGGACGTTGACATTCGGTCGTAACAGCATGTGTGGTGCACCTGCTCGTACTGTTGGCTGGCGTGACCCTGGTTTTATACACACGAGTTTTCTAAATGACTTATGGCCAAACATGAAATATTATTACAGAGTTGGTCATAGGCTATTCAACGGTTCATATGTCTGGGGAAAAGTAAATTTATTTACATCATCTCCATATCCTGGACAAGATTCTCTACAACGTGTGATTATTTTTGGGGACATGGGGAAGGCAGAACGTGATGGGTCTAATGAGTATAATAACTTCCAGCCCGGGTCTCTTAACACTACTGATAGGCTAGTTGAGGACTTGGAGAATATTGACATAGTTTTCCATATTGGAGACATTGTTTATGCAAATGGATACATCTCTCAATGGGATCAATTTACATCACAAATAGAGCCTATTGCTTCACATGTTCCTTACATGATAGCCAGTGGAAACCATGAACGTGATTGGCCAAATACAGGTTCTTTCTATAAGAACCTTGATTCAGGTGGAGAATGTGGTGTCCCAGCTCAAACCATGTTTTATGTGCCTACAAATAACAGGGACAAGTTTTGGTACTCTACCGACTATGGCATGTTCCATTTCTGTATTGCTGATTCAGAACATGATTGGCGAGAGGGAACAGAGCAATACAAGTTCATCGAGGAATGTTTTGCATCTGCCGATAGACAGAAGCAGCCCTGGCTTATCTTTATTGCCCATCGTGTTCTAGGCTACTCCTCAGCCTCCTGGTACGCGGAAGAGGGAGCATTTGAAGAGCCTATGGGGAGAGAGATGCTGCAAAAGCTCTGGCAGAAGTATAAAGTGGACCTTGCCTTTTATGGCCATGTTCACAATTATGAGCGAACATGTCCCATCTATGAGAACATATGTGTGAGTTCTGAAAGGTCTCACTATTCTGGTACGTTCAATGCAACCATACACGTAGTGGTTGGTGGGGGAGGTTGTGCCCTAGCTGATTATACTACTCTACAAACCAGTTGGAGTTATTTCAAGGACCATGATTATGGATTTGTTAAGCTCACGGCTTTTAATCATTCTTCTTTGCTGCTCGAGTACAAGAAAAGTTCAGATGGGAAAGTTTATGATCAGTTTTGGATAACAAGAGAGTACAGGGATATTCTCGGATGTGATACCATTGGCAACTGCCCCTCTACTACCTTAGCTTCATAA___ATTGGGATACTCATAATAATAATAAAATTAAAAGAATATTATGCCCCTGGGGTATTTTGGGACATTCGTTCCACACTTATTGTGGATTTGGTGGAAAGATGGGTTCAGTCTTGTTTGACTTCACTGTCAAAGTTATATGGTTTCTCATATGAAGATTACAAGGTCCTACCATGTTCAAAGATTTTATGTGTCTCCATCCAAGTGTGGTTACATTAAATTATTCATTCATTCCCTTCTATCTAATGAATAAAATGCAATTCTTATATGTCAAATTAATGCAATTGTTATGTTCAATTTGGGTGAACATGAAATCAGATGTAATCATACACAGAATAGAATGGAACAGTTAGTATTACCAGAC

Fln Alignment:

Contig9549___VTVKFNHPSPSASDWIGVFSPAKFNGSVCSP------ESGPESDQVPYLCTAPIKFQYANFSAHNYVR---------IG--------NGSLKLQLINQRADFAFALFTGGLSNPVLLAISNTVRFVDPKSPVYPRIAQ-GKSWDEMVVTWTSGYGIEEATPIVQWGPQGEESKFLSPAGTLTFGRNSMCGA---PARTVGWRDPGFIHTSFLNDLWPNMKYYYRVGHRLFNGSYVWGKVNLFTSSPYPGQDSLQRVIIFGDMGKAERDGSNEYNNFQPGSLNTTDRLVEDLE--NIDIVFHIGDIVYANGYISQWDQFTSQIEPIASHVPYMIASGNHERDWPNTGSFYKNLDSGGECGVPAQTMFYVPTNNRDKFWYSTDYGMFHFCIADSEHDWREGTEQYKFIEECFASADRQKQPWLIFIAHRVLGYSSASWYAEEGAF--------EEPMGREMLQKLWQKYKVDLAFYGHVHNYERTCPIYENICVSSERSHYSG-------TFNATIHVVVGGGGCALADYTTLQTSWSYFKDHDYGFVKLTAFNHSSLLLEYKKSSDGKVYDQFWITR
B8LQ97______________ITISGVH-TPLASDWIAILSPYSVNDTYCPGVKRMYVETG-DIASLPLLCQYPLKFQFL-LADPDYLTCKKKQCQRSIGRWCLWSTCSGTISARVVNIRTDIRIMFFGGGFDFPCILANSELLKFANPRAPLYGHLSSMDSSSTVMRLTWISGDGKP------QYVHYGDGKLALSTVATFT--PNDLCDSFVSPAVDFGWHNPGFIHTALLDGLLPSKSYLYKYG----SDEVGWSTTTIFSTPPAVGSNQLT-FVTYGDMGKAERDGFGEHY-IQPGALQVIDAVEREVHAGKIDMILHIGDISYATGFLAEWDFFLEMIGPVASRVPYMTAIGNHERDFPKSGSYYEGPDSGGECGVPYEMYFQMPVNGKDKPWYSMEHGPVHFTIMSTEHPWDIGSDQFNWIKADLASVDRKRTPWLIFAGHRP-QYSSL-----EGGFIFSTIIPAVDVHFRLVIEPLLLFYQVDLALWGHVHNYERTCAVNNSQCLNYPMRDHGGIDNYKSSTYSAPVHVIIGMSGFELDSFITMTKSWSLVRISEFGYVKVHA-TTGKILVQF-KLPDGRIADQFSLSR

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
213	50		50		1.0
286	25	75			0.996473
369	87		12		0.992554
370	87			12	0.992554
375		12		87	0.992554
377	87			12	0.992554
378			11	88	0.923564
379			12	87	0.992554
380	87	12			0.992554
385		12	87		0.992554
389	12			87	0.992554
872		83		16	0.994512
2131	80		20		0.995493
2132	80			20	0.995493
2134	80			20	0.995493
2137		20	80		0.995493
2138		20		80	0.995493
2139	80			20	0.995493
2140		80		20	0.995493
2141	80		20		0.995493
2143		20	80		0.995493
2144			80	20	0.995493
2145	80		20		0.995493
2148		20		80	0.995493
2280		14		85	0.993533
2382	14			85	0.993533
2386	83		16		0.994512
2392		83	16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
2205	2217	ATA ATA ATA ATA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain