SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9539

Length: 2006 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9539
CGTCGTGACCTTGGCTGTCACTCATCAGTTGAAGTAGAAATATGAGAAGAGTTTCATGAAGCCGGGCGTCGTGACCTTGGCTGTCACTCATTTCTAGTATGACGGAGGCCAGGCTTGGTTGACATCAAGTTGGTCAATTTGTATATTTGTGAGCACATTTTGAACACGATAGCAATGCTTGCGACAGAGTGGCTAATGCAGGGGCCCTATAGGTTTCAGAAATATATGATGGACACCTTGAAGGTTGAACTCCAAAATTTCGAAGTTGTTTCTAAAATATAGTGTTTTACAGAAGTTATTAGGTCTTGATGTTTCTGATGAGCACGATCTGCTGCTGAGGGGGGTTTAAGAATATCCATTAGGTAGCATTTATGGATTCATCAAGTCTGTCTAGAGAAACTAGTCCACCTGGTTCAGATTCAGGTGTGGGTGGAAGTGGAAGACCAAGTGAAGCAATTGGATATAGTCCTGCACGGTTGTTTTCATGTGATTACTATGAAGTAGAGCATGTCCGTAATATTGCACAAGCCTTGCTTTCAGGCTTGGCCGCTGCATGTGTGGAAAGTACCATGGGAGACCTCTTCAAGACTCCGGCATCTGTAGCTGCCAATGTGAGGAAGGAAATGATTGAATATCTTCGGCAACAGAGTGAAGTCTATCCTACACAATATGTGATGATTGTCGGAAATTCGGGCTCTCCAGAAATCCCTGTTGATGTGGTTGGTGACCTGCTTGATAACTTTGTGCACGATAAGCGAAATTTATTTACCAGGATGTCTGGCTGGCTTCTCAGTGAACAGAAGGAAGACAAGGTTGATGACTTTGTTGAAGAACTGGAGACAATGGGGTTTTGGGTGAAGGGGCGAAGAGAAAATTTAGCAAAGGATCTCTTGAAGAGCATTGACCTGAGCAATGCCTACCACTGCGAGATGAAGTTTGACTCTAGTGAAGAACTTGCCTTGCACAAAAGTAAGTGCCCCCTGCGACCTGTAAATTGTGCAAACGAGGGATGCAGGGAAGTATTTTCTTCCTTGTATGCAAAAAAGCACGATGATACATGTCCTTTAAAACTGGTCCCTTGTGAGCAGAATTGCTCCGCAATGGTGAACAGGTCTGAAATGGATAGGCACTGCATAACAGTATGCCCTATGAAAGTTGTTAATTGTCCATTTTATCAAGTTGGCTGTTTATCCACTATACCTCAGAGTGCAGTTGAGGACCATTGTGCGGGATTTCTACAGTCACATTTGTTTTATGTCCTTCAAATGCTACATAAGCAGGAAGCATCAGTTGGAGATCTGACACAACGTGTGATATTGCTGGAACAGTCTCTCTCTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAGAGAGACTGAAAATTGCAAGGAATATAAACTGGATAATTTATTCTCCACTTGGATTTGAGCAGGAAAAGGTCATTAAAGGTGAATGGAATAAAAACGCTTTCAAGGCAAGCTGCATGACAGATAAAGAATCCTATATAATCGGCTTATATGATTTTGGAATCAATTCACTTGGTCTTTGAGATCAAAATGTCTTATTGCTGATTTAGAACTAACAAAATGAGAAGGGGATGCCCAGAAAAGGTACAGTTGCAAGCCATGTTGGATACTATTTCTTGCATCCACCTATATAAAACTTCTTTTGTTCTTTGTTTAGAGTTGTATTCTTAGCTTATTTTGAATTTTAATAAATTCATATTCTTTGGACGATTGACAAAAACAAGGGTGCAGCAGCATCCAAAAAGTTTCCTTTGTAGTTGGGGAAAAAGTTCCTCACTTTTCTTTAGTCGGAGCGGTGCAAATTATTTC

Ace file of the UniGene sp_v2.0_unigene9539

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	homogentisate solanesyltransferase [Arabidopsis thaliana] ref\|NP_001189865.1\| homogentisate solanesyltransferase [Arabidopsis thaliana] gb\|AAF23211.1\|AC016795_24 hypothetical protein [Arabidopsis thaliana] dbj\|BAB03105.1\| unnamed protein product [Arabidop	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	49%
Blast2go	homogentisate solanesyltransferase	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, TRAF-type	IPR001293	-	-
Sma3	Plant regulator RWP-RK	IPR003035	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7TI86

Fln msg:

Fln protein: MDSSSLSRETSPPGSDSGVGGSGRPSEAIGYSPARLFSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSPEIPVDVVGDLLDNFVHDKRNLFTRMSGWLLSEQKEDKVDDFVEELETMGFWVKGRRENLAKDLLKSIDLSNAYHCEMKFDSSEELALHKSKCPLRPVNCANEGCREVFSSLYAKKHDDTCPLKLVPCEQNCSAMVNRSEMDRHCITVCPMKVVNCPFYQVGCLSTIPQSAVEDHCAGFLQSHLFYVLQMLHKQEASVGDLTQRVILLEQSLSLSQRSAAVDIGSLCLIIKEQEAKIKTLEQDVGKLQQNMKTSDVSAEVLQLRREMRSLQKKMDSQSLK*

Protein Length: 391

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCAGTTGAAGTAGAAATATGAGAAGAGTTTCATGAAGCCGGGCGTCGTGACCTTGGCTGTCACTCATTTCTAGTATGACGGAGGCCAGGCTTGGTTGACATCAAGTTGGTCAATTTGTATATTTGTGAGCACATTTTGAACACGATAGCAATGCTTGCGACAGAGTGGCTAATGCAGGGGCCCTATAGGTTTCAGAAATATATGATGGACACCTTGAAGGTTGAACTCCAAAATTTCGAAGTTGTTTCTAAAATATAGTGTTTTACAGAAGTTATTAGGTCTTGATGTTTCTGATGAGCACGATCTGCTGCTGAGGGGGGTTTAAGAATATCCATTAGGTAGCATTT_-_ATGGATTCATCAAGTCTGTCTAGAGAAACTAGTCCACCTGGTTCAGATTCAGGTGTGGGTGGAAGTGGAAGACCAAGTGAAGCAATTGGATATAGTCCTGCACGGTTGTTTTCATGTGATTACTATGAAGTAGAGCATGTCCGTAATATTGCACAAGCCTTGCTTTCAGGCTTGGCCGCTGCATGTGTGGAAAGTACCATGGGAGACCTCTTCAAGACTCCGGCATCTGTAGCTGCCAATGTGAGGAAGGAAATGATTGAATATCTTCGGCAACAGAGTGAAGTCTATCCTACACAATATGTGATGATTGTCGGAAATTCGGGCTCTCCAGAAATCCCTGTTGATGTGGTTGGTGACCTGCTTGATAACTTTGTGCACGATAAGCGAAATTTATTTACCAGGATGTCTGGCTGGCTTCTCAGTGAACAGAAGGAAGACAAGGTTGATGACTTTGTTGAAGAACTGGAGACAATGGGGTTTTGGGTGAAGGGGCGAAGAGAAAATTTAGCAAAGGATCTCTTGAAGAGCATTGACCTGAGCAATGCCTACCACTGCGAGATGAAGTTTGACTCTAGTGAAGAACTTGCCTTGCACAAAAGTAAGTGCCCCCTGCGACCTGTAAATTGTGCAAACGAGGGATGCAGGGAAGTATTTTCTTCCTTGTATGCAAAAAAGCACGATGATACATGTCCTTTAAAACTGGTCCCTTGTGAGCAGAATTGCTCCGCAATGGTGAACAGGTCTGAAATGGATAGGCACTGCATAACAGTATGCCCTATGAAAGTTGTTAATTGTCCATTTTATCAAGTTGGCTGTTTATCCACTATACCTCAGAGTGCAGTTGAGGACCATTGTGCGGGATTTCTACAGTCACATTTGTTTTATGTCCTTCAAATGCTACATAAGCAGGAAGCATCAGTTGGAGATCTGACACAACGTGTGATATTGCTGGAACAGTCTCTCTCTCTTAGTCAGAGGTCTGCAGCTGTGGACATAGGATCACTGTGTTTGATTATAAAGGAGCAGGAAGCAAAGATCAAGACACTTGAGCAAGATGTTGGCAAGCTTCAACAAAACATGAAAACTTCTGATGTTTCTGCTGAAGTTTTGCAATTACGTCGAGAAATGCGGAGTTTACAAAAGAAAATGGATAGTCAGAGCCTTAAATAG___AGAGACTGAAAATTGCAAGGAATATAAACTGGATAATTTATTCTCCACTTGGATTTGAGCAGGAAAAGGTCATTAAAGGTGAATGGAATAAAAACGCTTTCAAGGCAAGCTGCATGACAGATAAAGAATCCTATATAATCGGCTTATATGATTTTGGAATCAATTCACTTGGTCTTTGAGATCAAAATGTCTTATTGCTGATTTAGAACTAACAAAATGAGAAGGGGATGCCCAGAAAAGGTACAGTTGCAAGCCATGTTGGATACTATTTCTTGCATCCACCTATATAAAACTTCTTTTGTTCTTTGTTTAGAGTTGTATTCTTAGCTTATTTTGAATTTTAATAAATTCATATTCTTTGGACGATTGACAAAAACAAGGGTGCAGCAGCATCCAAAAAGTTTCCTTTGTAGTTGGGGAAAAAGTTCCTCACTTTTCTTTAGTCGGAGCGGTGCAAATTATTTC

Fln Alignment:

Contig9539___FSCDYYEVEHVRNIAQALLSGLAAACVESTMGDLFKTPASVAANVRKEMIEYLRQQSEVYPTQYVMIVGNSGSP--EIPVDVVGDLLDNFVHDKRNLFTRMSGWLLSEQKEDKVDDFVEELETMGFWVKGRRENLAKDLLKSIDLSNAYHCEMKFDSSEELALHKSKCPLRPVNCANEGCREVFSSLYAKKHDDTCPLKLVPCEQNCSAMVNRSEMDRHCITVCPMKVVNCPFYQVGCLSTIPQSAVEDHCAGFLQSHLFYVLQMLHKQEASVGDLTQRVIXXXXXXXXXXXXAAVDIGSLCLIIKEQEAKIKTLEQDVGKL--QQNMKTSDVSAEV
D7TI86______________FPCDFFDTEIVHKIAQALLPGLASACVDNTTGDLFRSPASVAVDIRKEMVEYLTQRSESFVAESVILEDGPDTEVSDHPFDIISDFVDDFASSKRNLFSRVSGWLLSERREDKIDDFVQEMEINSFWLLDRRAAIAQTLLKNADFKNTFHCNMNFSSAEELDEHRSNCSFRSMNCMNEGCNSSFCAAHMEKHDSVCPFKIIPCEQQCSENLMRREMDRHCITVCPMKLVNCPFYSIGCQSTVHHCMVEQHQSDNLDSHLLCVLQVTHK-DVSVEDLKQRVEQLKELSSPSELAEAKNVRSLTSAVKNLESKLGPLEVTVPKTVSEKNTETSDSVAQI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
548	16		83		0.994512
549	20	80			0.995493
550		80		20	0.995493
552		80		20	0.995493
1274			20	80	0.995493
1390		12	87		0.992554
1520	88		11		0.923564
1572	12		87		0.992554
1712			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain