SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9518

Length: 1749 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9518

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acyl-CoA dehydrogenase [Dictyostelium discoideum AX4] sp\|Q54IM8.1\|ACAD8_DICDI RecName: Full=Isobutyryl-CoA dehydrogenase, mitochondrial; AltName: Full=Acyl-CoA dehydrogenase family member 8 homolog; Flags: Precursor gb\|EAL63127.1\| acyl-CoA dehydrogenase [	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Chlorella variabilis.	-	-	56%
Blast2go	acyl- dehydrogenase	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid metabolism	00071	74%
Blast2go	Valine, leucine and isoleucine degradation	00280	74%
Blast2go	beta-Alanine metabolism	00410	74%
Blast2go	Propanoate metabolism	00640	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid catabolic process	GO:0009062	Biological Process	74%
Blast2go	phospholipid catabolic process	GO:0009395	Biological Process	74%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	74%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	-
Sma3	Acyl-CoA oxidase/dehydrogenase, central domain	IPR006091	-	-
Sma3	Acyl-CoA dehydrogenase, N-terminal	IPR006092	-	-
Sma3		IPR013764	-	-
Sma3	Acyl-CoA dehydrogenase/oxidase, N-terminal	IPR013786	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: E1ZSF5

Fln msg: Separated hits, possible frame ERROR between 811 and 844,

Fln protein: MFSSCARRWLISASAKRTHECCCFPIKIQLASLSSFAEESTPLSQSQECPKGKLLEWDKHRLTPDQLNFRSLASDFSKREFVPFASEWDKREYFPVEVLRKAASLGFGGLFCSQDVGGSELSRADGAVIFEALAYGDVSTTAYLSVHNMCCSIIDRYGTEDQRKLWLPQLTRMDLLASYCLTEPCSGSDAASLQTSAKQVAGSGEYILNGTKAFISGGGASDLYLVMARTGVHKTKGISCFLLEKGMGGVIIRLxxxxxxxxxxxxTTKVIMEDVRVPATNLVGSEGLGLSIALGGLDGGRINIAACSVGGAQFCVDATQEYVQTRKQFGKALIDFQNTQFKLADMLTTVHASRLMVAHAASSLDAKDPGATASAAMAKRFATDASYNVSNDALQLHGGYGYLKDYPVERYLRDLRVCTIVEGTNEIMRMVITKQMMKT*

Protein Length: 441

Fln nts: CGTCGTGACCTTGGATGCCAGTGCTTTCGGCCCTTTGATCGGCAAA_-_ATGTTTTCTTCATGCGCTCGTCGATGGCTTATCTCAGCATCAGCCAAAAGAACACACGAATGCTGTTGTTTTCCGATTAAAATTCAGCTGGCCAGCCTTTCGTCGTTTGCGGAGGAATCAACTCCATTATCGCAGTCGCAGGAATGTCCTAAGGGAAAACTTCTTGAATGGGACAAACATAGACTCACCCCTGATCAACTCAATTTTCGATCTCTAGCATCTGATTTTTCCAAGCGTGAATTTGTGCCATTTGCATCTGAATGGGATAAGCGGGAATATTTTCCAGTTGAAGTGCTTCGGAAGGCAGCATCCTTGGGTTTTGGTGGGCTCTTCTGCAGTCAAGATGTTGGTGGTTCTGAATTGTCCAGGGCTGATGGTGCAGTGATATTTGAGGCACTAGCATATGGTGACGTAAGCACCACCGCATATCTTTCTGTACACAACATGTGTTGTTCCATAATTGACAGATATGGTACAGAGGATCAGAGAAAACTATGGCTGCCTCAACTTACAAGAATGGATCTTCTTGCATCTTACTGTCTTACAGAGCCATGTAGTGGGAGTGATGCTGCATCACTACAGACATCTGCAAAACAAGTGGCTGGAAGTGGAGAGTATATACTAAATGGTACCAAGGCATTTATCAGTGGAGGTGGTGCTAGTGACTTGTATTTGGTTATGGCTCGTACTGGAGTTCACAAGACAAAAGGGATCTCATGTTTCTTGCTGGAAAAGGGCATGGGGGGGGTTATCATTCGGTTGCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACCACAAAAGTCATTATGGAAGATGTGAGAGTACCAGCTACAAATCTTGTTGGAAGTGAAGGTCTAGGACTTTCCATAGCTTTGGGAGGGCTTGATGGAGGACGCATCAATATTGCAGCTTGCAGTGTTGGTGGAGCCCAATTCTGTGTTGATGCTACCCAAGAATATGTGCAAACACGAAAGCAATTTGGCAAGGCACTTATAGACTTCCAGAATACACAGTTCAAGCTAGCAGACATGCTAACAACAGTACATGCCTCTCGGTTGATGGTAGCCCATGCAGCTTCTTCCTTGGATGCGAAAGATCCAGGTGCAACAGCTTCTGCGGCCATGGCCAAAAGGTTCGCAACAGATGCCAGCTATAATGTTAGCAATGATGCTTTACAATTGCATGGGGGCTATGGCTATCTAAAGGACTATCCAGTTGAAAGATATTTAAGAGATTTACGTGTGTGCACAATAGTTGAAGGTACTAATGAGATCATGCGAATGGTCATAACAAAACAGATGATGAAGACCTGA___CGCCTGGCTGTCACTATGGCTCTTCTAAGATTCATTCATCACAAAGAACTTTGACTGAAATGAGATTTGACCTGCATAAACTGACTTGGAAATATACAGGTCCCGCTCATATTAAACAACTGATTCATAGATTGAAATTTCTCATCTTTCGCTTGTTGACAATAAAAATTGATATGATAGGGGTTAAAAATTTTGAAAGATCATCTTTCAGGTTGTATATCAAGCAGCTGTGAACCTAAGAAATGGTTCAAACATAATTATTATTTTTACAGTTGAGTTGTTCTACAAAATAATTACTAACGCCTTGTATGTTTCAAGGCTGAAAATTGTATCTAGTCTTCTCTTGCAATATTGTAAGTTCTTTACAAACATGGATCTGTATTA

Fln Alignment:

Contig9518___LTPDQLNFRSLASDFSKREFVPFASEWDKREYFPVEVLRKAASLGFGGLFCSQDVGGSELSRADGAVIFEALAYGDVSTTAYLSVHNMCCSIIDRYGTEDQRKLWLPQLTRMDLLASYCLTEPCSGSDAASLQTSAKQVAGSGEYILNGTKAFISGGGASDLYLVMARTGVHKTKGISCFLLEKGMGGVIIRLPxxxxxxxxxxxTTKVIMEDVRVPATNLVGSEGLGLSIALGGLDGGRINIAACSVGGAQFCVDATQEYVQTRKQFGKALIDFQNTQFKLADMLTTVHASRLMVAHAASSLDAKDPGATASAAMAKRFATDASYNVSNDALQLHGGYGYLKDYPVERYLRDLRVCTIVEGTNEIMRMVITKQMMK
E1ZSF5______________LTEDQRQFQHVAETFAREELAPYSADWDAKHHFPIDTIKRAADLGFGGLYVGEDVGGAALSRLDAAIIFEALSWGCVPTAAYLSIHNMVCHVIDRYGTARQRGAYLTALTSMEALASYCLTEPSAGSDASALKMTARREGASGDYILNGAKAFISGGGVSDVYLVMARTGEPGPKGISAFLVEKGTKGLSFGKPxxxxxxxxxxxTTAVMFDDVRVPSKNRVGQEGEGFKLAMKALDGGRINIGACSIGGAQFCLDTAREYTQARQAFGGPISQFQATQFRVADMATSIQASRLMVRHAAAALDAHSPTATMECAMAKRFATDACYRVTDDALQLLGGYGYLKEYPIERYMRDLRVHCILEGTNEVMRIIINRELDK

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
664	16		83		0.994512
836	14		85		0.993533
838		14	85		0.993533
842		85	14		0.993533
844	85			14	0.993533
845	85		14		0.993533
846		85		14	0.993533
904	83	16			0.994512
907		16	83		0.994512
908	83		16		0.994512
909	83			16	0.994512
911	20		80		0.995493
912		20		80	0.995493
915	80			20	0.995493
921			20	80	0.995493
924	20	80			0.995493
925	80	20			0.995493
938		40	60		1.0
1162			20	80	0.995493
1263	88	11			0.923564
1264	88			11	0.923564
1265		11	88		0.923564
1266	11		88		0.923564
1267	88			11	0.923564
1366	64	35			1.0
1368	64			35	1.0
1370		64	35		1.0
1374		35		64	1.0
1377		64		35	1.0
1639	14			85	0.993533
1640		14		85	0.993533
1642	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain