SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9475

Length: 1248 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9475

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chaperone DnaJ-domain containing protein [Arabidopsis thaliana] dbj\|BAB09499.1\| unnamed protein product [Arabidopsis thaliana] gb\|ABN04738.1\| At5g59610 [Arabidopsis thaliana] gb\|AED97211.1\| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]	-	-	2.00386e-43	50%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	chaperone protein	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	protein folding	GO:0006457	Biological Process	70%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	70%
Blast2go	heat shock protein binding	GO:0031072	Molecular Function	70%
Blast2go	plastid	GO:0009536	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1 complex, gamma subunit	IPR000131	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3	Chaperone DnaJ	IPR012724	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BDU1

Fln msg:

Fln protein: MLCKYAFAMGVPWGGRLPVNNMSTTARVTVCLHSNITVSSNANRRVRRLRMVGVRASNNNKRRAESESPYEVLGVSVAASPQEIKSAYRKLALKYHPDVNKEPNAQEKFMRIKHAYNTLLDSNSRLKYDFRKHRADSRQTSKKGFQKEFEDEEEFYGFEDFFQDLQTEFRNWEASADTQGKPKSLWEELAELGEDFVEFLEKELNINDQINEDETSDGQEKRNRSEDINSSLTEDYSVKKNGQQNKLEADIDEIEAALAKLKRELGL*

Protein Length: 269

Fln nts: ATGGGGTAAACCATCTATACATTAATTCTGAAAGCTCAGGCGTAATTAAATTTCCACGAATAACTTAAATACTAATCAAAATGTCGCTTTACATCATTGGATTATATGTTTACAGCAATCTCTAATGAGCAGACAGGTGGAAGCCTTGTTCGGATATGAAAACCATTTCAAATGCTAACCATATTTAAAAGCTTCTGCATGTGTGTGTGAAGAGAGATGCTGCGTGTGAAATATATACAGGCAAACCG_-_ATGTTATGTAAGTATGCTTTTGCGATGGGCGTACCATGGGGCGGGAGACTACCAGTGAACAATATGAGCACGACTGCGCGTGTGACTGTGTGCCTCCATTCTAACATCACCGTCAGTAGCAATGCCAATAGGAGAGTGAGAAGACTGAGAATGGTGGGTGTTAGAGCAAGCAATAATAATAAGAGGAGGGCTGAATCTGAATCTCCATACGAGGTGCTGGGTGTATCAGTGGCCGCATCTCCCCAAGAAATTAAATCAGCTTACAGAAAATTGGCCCTTAAATACCATCCAGACGTCAACAAGGAGCCAAATGCGCAGGAAAAATTTATGCGCATTAAGCATGCATATAATACTTTGTTGGACTCAAATTCTCGTCTTAAGTATGACTTTAGAAAACATCGCGCTGATTCACGTCAAACATCTAAAAAGGGTTTCCAAAAGGAATTTGAAGATGAAGAAGAGTTCTATGGATTTGAGGACTTCTTCCAGGATTTACAAACAGAGTTTCGTAACTGGGAAGCTAGCGCAGATACACAAGGCAAACCAAAGAGCTTGTGGGAAGAGCTTGCTGAGCTTGGAGAAGATTTCGTTGAATTTTTAGAGAAGGAATTGAATATTAATGATCAAATCAATGAAGATGAAACATCAGATGGACAGGAGAAAAGAAATAGAAGTGAAGACATCAATTCAAGTTTGACTGAAGATTATTCCGTTAAGAAAAATGGTCAACAAAACAAACTAGAAGCTGACATTGATGAAATTGAAGCTGCATTAGCCAAGTTGAAAAGGGAGTTGGGACTTTAG___GGTGTTACTACCAGCTCGGAGCTTACGTTCCCTAGAGTAAGTTCTGTATCTATAGACTTTGATGAATATTCTCCATTAGCCAATTTGCAAAGGGAGTTGGGACTTTAGGGTGTTACTACCAGCTCGGAGCTTACGTTCCCTAGAGTAAGTTCTGTATCTATAGACTTTGATGAATATTCTCGATCATATTGTAAAA

Fln Alignment:

Contig9475___SNNNKRR-------AESESPYEVLGVSVAASPQEIKSAYRKLALKYHPDVNKEPNAQEKFMRIKHAYNTLLDSNSRLKYDFRKHRADSRQTSXXXXXXXXXXXXXXXXXXXXXXXLQTEFRNWEASADTQGKPKSLWEELAELGEDFVEFLEKELNINDQINEDETSDGQEKRNRSEDINSSLTEDYSVKKNGQQNXXXXXXXXXXXXXXXLKRELGL
A5BDU1______________NGKNKRRNXTLLKASRRESPYEVLGVSPSASPDQIKRAYRKLALKYHPDVNKEANAQEKFMRIKHAYNALMNSESRRKYDSGSRASNYTYSNAERNQSRDTQEEEFYGFEDFFRDLQEEFRNWEASAASQGKPKSLWEELAEIGEEFVEFLEKELNITDSEVEAEEYGGSQKENPFTSSETGTTGGGGQSKGGQGSSIEENIDEIEATLAKLKKELGL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
895		90		10	0.90298
908		12	87		0.992554
910	87			12	0.992554
911	87			12	0.992554
1134	83		16		0.994512
1135	83	16			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain