SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9464

Length: 1715 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9464

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SJF9_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	mitochondrial substrate carrier	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	response to iron ion	GO:0010039	Biological Process	78%
Blast2go	iron ion transport	GO:0006826	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN91

Fln msg:

Fln protein: MKGEEQGRGSGIHFHFRLPQLENVNPWRDLENVFRPIWEHGKGKGKGREETEGRRKGANNERIRNVKNSLSVVERAMIGAGAGGIAGAFTYVCLYPLDTVKTKLQMRGASQLYGGLGTVEVMGRVLKEDGIGGLYSGVSAVLVGSTISSAIYFGTCEFAKAFLVSKTALLQIPSLAIPPVAGALGNVVSSTVMVPKELITQRMQAGAAGRSWQVLLATIEREGIRGLYAGYSATILRNLPTGVLSFSSFEYLKAIVLSKTKKPHLEPFQSVCCGALAGAISAFLTTPLDVVKTRLMTQGIGVKAGLKSEIATLAYKGFSSTIHQIWREEGWLGLTRGIGPRVLHSSCFAALGYFAFETARLTLLQFYLARNAPPALPLEAGTNRD*

Protein Length: 387

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATTAGTTGAGTTTAGGAGTGAGAGA_-_ATGAAAGGCGAAGAGCAAGGAAGAGGCAGCGGTATACATTTCCATTTTCGGCTTCCCCAACTTGAAAATGTGAATCCATGGAGGGACTTGGAAAATGTCTTCCGTCCAATCTGGGAACATGGCAAGGGCAAGGGCAAGGGACGAGAGGAGACTGAGGGACGCAGGAAAGGGGCAAACAATGAGAGGATTAGGAATGTTAAGAACAGTTTGTCGGTTGTGGAGAGAGCGATGATCGGGGCCGGTGCAGGAGGCATTGCGGGAGCATTCACCTACGTATGTCTGTATCCACTGGACACGGTGAAGACGAAGCTCCAGATGAGAGGGGCATCGCAGCTCTATGGAGGATTGGGAACCGTGGAAGTGATGGGCAGAGTACTGAAGGAAGACGGGATCGGTGGCCTGTACAGCGGAGTGTCAGCTGTGCTGGTGGGCTCGACAATATCCTCTGCCATATACTTTGGCACATGCGAATTCGCCAAGGCATTTCTCGTCTCAAAAACGGCGCTGCTTCAAATCCCGTCTCTCGCAATTCCTCCCGTGGCGGGGGCGTTGGGCAACGTGGTCTCCTCCACCGTCATGGTGCCCAAGGAATTAATTACTCAGCGGATGCAAGCCGGGGCCGCTGGCCGTTCTTGGCAAGTTTTGTTAGCCACCATAGAGCGCGAGGGCATCCGGGGTTTGTATGCCGGGTATTCCGCGACCATTTTGAGAAACCTGCCCACCGGTGTGCTCAGCTTTTCCTCTTTTGAGTATCTTAAGGCTATCGTGCTGAGTAAAACGAAGAAGCCCCATTTGGAGCCATTTCAGAGCGTCTGTTGTGGTGCGTTGGCCGGGGCTATTTCTGCATTTCTCACAACCCCTTTGGATGTTGTTAAGACGAGACTAATGACGCAGGGAATTGGAGTCAAAGCCGGTCTGAAGAGCGAAATTGCGACTTTAGCTTACAAAGGGTTTTCGTCCACCATTCACCAAATATGGAGGGAAGAAGGCTGGCTGGGCTTGACTAGAGGAATTGGCCCCCGTGTTCTTCACAGTTCCTGCTTTGCTGCCTTGGGTTACTTCGCATTCGAAACTGCAAGGCTCACTTTACTTCAGTTTTACCTCGCCCGCAATGCTCCTCCCGCTCTTCCCCTCGAAGCTGGCACCAATCGTGATTGA___TTACAGTAAGCTATTCTTTTCACACACAAATCAGTTGATAAGATAAACCCCTTCACAAGTCTTGAATGCTTGTCATGTTCTTGGGCAGGAAAAATATTTTCATTATTCAATAAGATCATCATTTTTTGCGAGACACGCCTACGCAAAAGATGCTTAATTAATAAGATTAATGGCTGTGCTGAGAGAAGCAAAGTTCTGAGTTGTCTGCTGGGGAGATGTCTTACTCTACCGCATTGATCCATCTTAGCCTGGGATCTTTTAAGTTGAGAGGGATCAGAAAACTGGACTGCAACCTTCACGCCTCCAGTGCTTTGATTCCTCACAGCTTATTAAATCCATGTTAAAATGGATTTATGCTAGTTTATATCATGAAGATGATTAAAACTATAAATGCCATTGTTAGAGAATTCTAGCTAACATACAAGAATGGACGATATTGTCTCACGGATAATCAATTTCGCTAGGTATCATGATAATGGCAGAGATTTGTTATGAAGGGAATACATT

Fln Alignment:

Contig9464___MKGEEQGRGSG-IHFHFRLPQLENVNPWRDLENVFRPIWEHXXXXXXXXXXXXXXXXXANNERIRNVKNSLSVVERXXXXXXXXXXXXXFTYVCLYPLDTVKTKLQMRGASQLYGGLGTVEVMGRVLKEDGIGGLYSGVSAVLVGSTISSAIYFGTCEFAKAFLVSKTALLQIPSLAIPPVAGALGNVVSSTVMVPKELITQRMQAGAAGRSWQVLLATIEREGIRGLYAGYSATILRNLPTGVLSFSSFEYLKAIVLSKTKKPHLEPFQSVCCGALAGAISAFLTTPLDVVKTRLMTQGIGVKAGLKSEIATLAYKGFSSTIHQIWREEGWLGLTRGIGPRVLHSSCFAALGYFAFETARLTLLQFYLARNAPPALPLEAGTNRD
B8LN91______________MKGEEQGRGGGGIHFHLRLPQLENVNLWRGLENTFRPIWENGKGKAKRGEEAEAPPKGANSVRIRKVNNRLSVVERAMIGACAGGIAGAFTYVCLHPLDTVKTKLQMRGASQLYAGLGTVEVMGRVLKENGIGGLYSGVSAVLVGSTISSAIYFGTCEFAKAFLISKTTLLQIPSLAIPPVAGALGNVVSSAVMVPKELITQRMQAGAPGRSWQVLLATVEREGIWGLYAGYSATILRNLPTGVLSFSSFEYLKAAVLNKTKKSHLEPLQSVCCGALAGAISAFLTTPLDVVKTRLMTQGIGIKAGLKNEIAASAYKGFSSTLHQIWREEGWLGLTRGIGPRVLHSSCFAALGYFAFETARLTILELYLARKVPPALSLEADNNRD

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
40	50			50	1.0
202		28	71		1.0
246			12	87	0.992554
247	87		12		0.992554
351		87		12	0.992554
512	75		25		0.996473
594	25	75			0.996473
658		42		57	1.0
669	85			14	0.993533
735	14		85		0.993533
737			14	85	0.993533
738			14	85	0.993533
784		28		71	1.0
813		12		87	0.992554
837		87		12	0.992554
839	87			12	0.992554
890			88	11	0.923564
1078		75		25	1.0
1159		62		37	1.0
1192		54	36	9	1.0
1225	90		10		0.90298
1227		90	10		0.90298
1228		10		90	0.90298
1231			10	90	0.90298
1236			10	90	0.90298
1237		90	10		0.90298
1238	90		10		0.90298
1239		90	10		0.90298
1240	90			10	0.90298
1241	10	90			0.90298
1245	90		10		0.90298
1246	90			10	0.90298
1249	90	10			0.90298
1250	10		90		0.90298
1253		10	90		0.90298
1279	14			85	0.993533
1280		14	85		0.993533
1282	85			14	0.993533
1416	33		66		0.997452
1675		33		66	0.997452
1676			33	66	0.997452
1677		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
171	190	GGCAAG GGCAAG GGCAAG GG	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain