SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9396

Length: 1954 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9396
ATGGGGAACACAAATCGAAATTTCAATGCCCGATTATTACAAAAAATAGGCCAGGCGTCTGGTGGGCGACATGGATTGAGATTTCGTACGCTTTTGCAGATTGTGTTGGATTTTCATGGATTTCCTCTCACTCTCATAATCGTCGTGACCTTGGCTGTCACTCAATTTTCATTTTCTCGTGACTCGAGATTTAATGGCGAGCGTTTCAACCTAGATGCAGAGCATTCAAGGCTGTGGAATTGCAGAGTCTGGACATACTTATGGAGACTCTGGTTTCAAGGGATGCAGGTGCTGTTAAGAGTCTTGTTGCTATAGAAGAAGGGTGTGGCCTGAAATGCTCTGTGGATTCCATTAGAATGCTAGAGGACCAGAAGCCTACGGCAATCAGTAAGTTGATGCAGGTGAGGAAGAGTTGGGATTCTGTATTTGATATAGCTGATCCTCGAATTGAACAGGATTTGGCTTCCGAAGCCTGTAGGGAGTCTGTGAGGTTTTGCTTGTTTGGGCTTATTGCCATGGTTGTAGCACACTATCTGTTTTTGGGTGCTCTAGAGGTCAAGGGAAGAGGGATTGAGAAGGCTCTCTGTGTGATTATGATAGGATTAAGCTTGGTTTTGCGGATAATGGAGGTTGGGGTTGTGGTTTGTTTGTGCACATGGGGTTTCTTTCGGGTGGTCTGGAAGCACAGGAGTGCATGTTCATGGTGTCAGGATATGGGGCACAGTCGAACCCAGCCAGAGGATGCAGACCAGAAGGCTCAGAATGTCCAGTGCCCCAGACAATTAATGAACTGGGTGTTACAGCGTATCAGAGGTTTCAGATTAGCATGCATCATTCGAGATGGCCTCCACACTGCTGCACAGATTGAGGGCAGAAGACACATAGTTAGGACTGTGAAGTCAGAAAGCTCTTTCATCCCTCCGGATTCTAGTTCCCCCAGACGAGTCTTGCTTGTGGAAGACACAGAAATTAACAGAATTATATTGAGGAAGGTGCTTCAAACCCTAAACCTTCACTGTGAAGAAGCTGAGAATGGAAAGGTAGCAGTGGACTACTTCAAACAGGGAAGAACATATGATCTCGTGTTAATGGACAAAGAAATGCCCGTCATGGATGGACACGAGGCAACAAGGCAACTGAGATCCATGGGAGTCAAGACACCCATTGTTGCACTTACTGGAAATACCTTGCAATCTGACAGAGACCTCTTTTTTGAGGCTGGTGTGGATGATTTTCAGACAAAGCCTTTGCCAAGAGACAAACTTTTGCAATTACTAGCTCGATATGGTGTTAAGAATTGTGGTGGCAACAGAAAGGGTTAAAAGAATTTCACGGCTCCATGCTCCACTGTAATATAATAACGGATTCGTTAGGGAAAAAGGCATTGCATATTACAGGTTGCCTTGTTTATAGAAATTGCTGACGTGATTGGCATTATTGCAGTGCTTTGAGTGATGAGGAATCTAGTTTTAAGGTATCCGGAGATATGTAATACAGTAATCTTCCTGAACAACACTGAAATTTAGGTCATCTGGGGAAGGCCAGATCTTAAAGTAAAATACGAAGAGGGTATGAAGACTGGGCAACTGTTTTTTCAATCAGTAGTGTCAATGGCTAAGCTGCAGCACTTTTTAATGTTTACCAATATCGGCATCGGTGTGAAACAGAATTTTGCCAAAATTTTGCTGTTCTGTGAAGGATTTTACCCCAGGTATTCGTTCTCAAGATCAGTCTATACAGCTTCAAGCATACTAATTGGCACGAGGGATCAACAGCAAGACCATGAGAGAGCTTTTATCTTTTTAGCGGATCCACTTCTCCATTTTTGTTGAAAAATGTTACCATTTTTGGGGAATTTTTGCAGTGTACAGGAATGGTCAGATAATTTTTTGCAGTGTACAAGATTTACAGGATTTGACAGATAATTAATCATATTTAATTGAAACTTCTAAGT

Ace file of the UniGene sp_v2.0_unigene9396

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sensory transduction histidine kinase [Rhodopirellula baltica SH 1] emb\|CAD71417.1\| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]	-	-	3.0e-21	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	sensory transduction histidine kinase	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	75%
Blast2go	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	75%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	75%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	75%
Blast2go	ATP binding	GO:0005524	Molecular Function	75%
Blast2go	two-component sensor activity	GO:0000155	Molecular Function	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC19

Fln msg: your sequence is longer than subject: 354 - 252

Fln protein: METLVSRDAGAVKSLVAIEEGCGLKCSVDSIRMLEDQKPTAISKLMQVRKSWDSVFDIADPRIEQDLASEACRESVRFCLFGLIAMVVAHYLFLGALEVKGRGIEKALCVIMIGLSLVLRIMEVGVVVCLCTWGFFRVVWKHRSACSWCQDMGHSRTQPEDADQKAQNVQCPRQLMNWVLQRIRGFRLACIIRDGLHTAAQIEGRRHIVRTVKSESSFIPPDSSSPRRVLLVEDTEINRIILRKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIVALTGNTLQSDRDLFFEAGVDDFQTKPLPRDKLLQLLARYGVKNCGGNRKG*

Protein Length: 355

Fln nts: ATGGGGAACACAAATCGAAATTTCAATGCCCGATTATTACAAAAAATAGGCCAGGCGTCTGGTGGGCGACATGGATTGAGATTTCGTACGCTTTTGCAGATTGTGTTGGATTTTCATGGATTTCCTCTCACTCTCATAATCGTCGTGACCTTGGCTGTCACTCAATTTTCATTTTCTCGTGACTCGAGATTTAATGGCGAGCGTTTCAACCTAGATGCAGAGCATTCAAGGCTGTGGAATTGCAGAGTCTGGACATACTT_-_ATGGAGACTCTGGTTTCAAGGGATGCAGGTGCTGTTAAGAGTCTTGTTGCTATAGAAGAAGGGTGTGGCCTGAAATGCTCTGTGGATTCCATTAGAATGCTAGAGGACCAGAAGCCTACGGCAATCAGTAAGTTGATGCAGGTGAGGAAGAGTTGGGATTCTGTATTTGATATAGCTGATCCTCGAATTGAACAGGATTTGGCTTCCGAAGCCTGTAGGGAGTCTGTGAGGTTTTGCTTGTTTGGGCTTATTGCCATGGTTGTAGCACACTATCTGTTTTTGGGTGCTCTAGAGGTCAAGGGAAGAGGGATTGAGAAGGCTCTCTGTGTGATTATGATAGGATTAAGCTTGGTTTTGCGGATAATGGAGGTTGGGGTTGTGGTTTGTTTGTGCACATGGGGTTTCTTTCGGGTGGTCTGGAAGCACAGGAGTGCATGTTCATGGTGTCAGGATATGGGGCACAGTCGAACCCAGCCAGAGGATGCAGACCAGAAGGCTCAGAATGTCCAGTGCCCCAGACAATTAATGAACTGGGTGTTACAGCGTATCAGAGGTTTCAGATTAGCATGCATCATTCGAGATGGCCTCCACACTGCTGCACAGATTGAGGGCAGAAGACACATAGTTAGGACTGTGAAGTCAGAAAGCTCTTTCATCCCTCCGGATTCTAGTTCCCCCAGACGAGTCTTGCTTGTGGAAGACACAGAAATTAACAGAATTATATTGAGGAAGGTGCTTCAAACCCTAAACCTTCACTGTGAAGAAGCTGAGAATGGAAAGGTAGCAGTGGACTACTTCAAACAGGGAAGAACATATGATCTCGTGTTAATGGACAAAGAAATGCCCGTCATGGATGGACACGAGGCAACAAGGCAACTGAGATCCATGGGAGTCAAGACACCCATTGTTGCACTTACTGGAAATACCTTGCAATCTGACAGAGACCTCTTTTTTGAGGCTGGTGTGGATGATTTTCAGACAAAGCCTTTGCCAAGAGACAAACTTTTGCAATTACTAGCTCGATATGGTGTTAAGAATTGTGGTGGCAACAGAAAGGGTTAA___AAGAATTTCACGGCTCCATGCTCCACTGTAATATAATAACGGATTCGTTAGGGAAAAAGGCATTGCATATTACAGGTTGCCTTGTTTATAGAAATTGCTGACGTGATTGGCATTATTGCAGTGCTTTGAGTGATGAGGAATCTAGTTTTAAGGTATCCGGAGATATGTAATACAGTAATCTTCCTGAACAACACTGAAATTTAGGTCATCTGGGGAAGGCCAGATCTTAAAGTAAAATACGAAGAGGGTATGAAGACTGGGCAACTGTTTTTTCAATCAGTAGTGTCAATGGCTAAGCTGCAGCACTTTTTAATGTTTACCAATATCGGCATCGGTGTGAAACAGAATTTTGCCAAAATTTTGCTGTTCTGTGAAGGATTTTACCCCAGGTATTCGTTCTCAAGATCAGTCTATACAGCTTCAAGCATACTAATTGGCACGAGGGATCAACAGCAAGACCATGAGAGAGCTTTTATCTTTTTAGCGGATCCACTTCTCCATTTTTGTTGAAAAATGTTACCATTTTTGGGGAATTTTTGCAGTGTACAGGAATGGTCAGATAATTTTTTGCAGTGTACAAGATTTACAGGATTTGACAGATAATTAATCATATTTAATTGAAACTTCTAAGT

Fln Alignment:

Contig9396___MVVAHYLFLGALEVKGRGIEKALCVIMIGLSLVLRIMEVGVVVCLCTWGFFRVVWKHRSACSWCQDMGHSRTQPEDADQKAQNVQCPRQLMNWVLQRIRGFRLACIIRDGLHTAAQIEGRRHIVRTVKXXXXXXXXXXXXX-RRVLLVEDTEINRIILRKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIVALTGNTLQSDRDLFFEAGVDDFQTKPLPRDKLLQLLARYGV
D5AC19______________MDVAQYLFLGAQELKERAGEEGLYFVEAGLNWVLLIMGVGLVAC------FGMVWKRRTY-SYCQAM-----QEEDADQRAQ-----KEFMTNAFNNTRDCRSACLIWDDLHTSSQIETRSHKVRTVKSKNSRMSEDSSSPPRRILLVEDTELNRIILGKVLQTLNLHCEEAENGKVAVDYFKQGRTYDLVLMDKEMPVMDGHEATRQLRSMGVKTPIVALTGNTLQSDKDLFFEAGVDDFQTKPLSKDRLVQLLARYGV

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
753	88		11		0.923564
965	12		87		0.992554
1024		33		66	1.0
1054		16	83		0.994512
1131		66		33	0.997452
1217		16		83	0.994512
1218	16			83	0.994512
1479	33		66		0.997452
1487			64	36	1.0
1518	91		5		0.99441
1519	91			5	0.99441
1527	93	6			0.99903
1531	93	6			0.99903
1541	5		94		0.998894
1551		5	94		0.998894
1552	91		5		0.995912
1555		3	6	90	0.997073
1557	90	3	6		0.997952
1559	93	6			0.999364
1560		6	93		0.999364
1562	90			6	0.997952
1563	93		6		0.999364
1564	93		6		0.999364
1565	93	6			0.999364
1567	93		6		0.999364
1568		93		6	0.999364
1569		6	93		0.999364
1571	93	6			0.999364
1572			93	6	0.999364
1573	93	6			0.999364
1574	6		90		0.997952
1585		50	50		1.0
1586		20		80	1.0
1615		76		24	1.0
1707		11		88	0.999937
1711	88			11	0.999937
1727		73		26	1.0
1825	10			90	0.90298
1838	80		20		0.995493
1849		60		40	1.0
1855		25		75	0.996473
1875		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain