SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9386

Length: 470 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene9386
CGTCGTGACCTTGGCTGTCACTCAGTGGGAATTTGCCATTGGCGTCCTTTTCGTCATTGCCACAGTGATTTCTCTTTATCTCTGTGCTTTGCAACTGCGCTGGACTGAGGGAGCCGGAGAAAAGCGGTTTCTGAACGTCGGGGCCGTTGGCCGACTCGGCTGATAGTGCGGAGGGTTTACTGACACATGTAGGGCTGCTGGATAGGAGCGCCAAATTCGCGTTTGGTATATTGGTTGGGCTCTTTGTGCAGCAGTGAGGACGACGCTTGAGCCTTTTTATCTTTTGTGCGAAGTGAAAGGACGTTGATTTTGGAAACGCATGCCGGTAGTGCTCTGGGGGCGTGCAAACTTTGCACGCCATTTGTCGTGAAGGCGCGATGGTTCGCCGCCATGGCTGGCAGCTGCCTGCTCACACTTTTCAGGTTGTAGCTATCACAGTGTTTTTCGTGCTGGCAATTGCATTCTATGCA

Ace file of the UniGene sp_v2.0_unigene9386

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative S-acyltransferase [Arabidopsis thaliana] sp\|Q6DR03.1\|ZDHC3_ARATH RecName: Full=Probable S-acyltransferase At2g33640; AltName: Full=Probable palmitoyltransferase At2g33640; AltName: Full=Zinc finger DHHC domain-containing protein At2g33640 gb\|AAT6	-	-	2.0e-08	83%
FL-Next	sp=Probable S-acyltransferase At2g33640; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	Mlo-related protein	IPR004326	-	-
Sma3	Peroxisome biogenesis factor 1, N-terminal	IPR015342	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q6DR03

Fln msg: Distance to subject end: 534 aas, your sequence is shorter than subject: 31 - 565

Fln protein: MVRRHGWQLPAHTFQVVAITVFFVLAIAFYA

Protein Length: 32

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGGGAATTTGCCATTGGCGTCCTTTTCGTCATTGCCACAGTGATTTCTCTTTATCTCTGTGCTTTGCAACTGCGCTGGACTGAGGGAGCCGGAGAAAAGCGGTTTCTGAACGTCGGGGCCGTTGGCCGACTCGGCTGATAGTGCGGAGGGTTTACTGACACATGTAGGGCTGCTGGATAGGAGCGCCAAATTCGCGTTTGGTATATTGGTTGGGCTCTTTGTGCAGCAGTGAGGACGACGCTTGAGCCTTTTTATCTTTTGTGCGAAGTGAAAGGACGTTGATTTTGGAAACGCATGCCGGTAGTGCTCTGGGGGCGTGCAAACTTTGCACGCCATTTGTCGTGAAGGCGCG_-_ATGGTTCGCCGCCATGGCTGGCAGCTGCCTGCTCACACTTTTCAGGTTGTAGCTATCACAGTGTTTTTCGTGCTGGCAATTGCATTCTATGCA

Fln Alignment:

Contig9386___MVRRHGWQLPAHTFQVVAITVFFVLAIAFYA
Q6DR03______________MARRHGWQLPAHTFQVVAITVFFLLTVAYYA

SNPs (tot: 5)

Position	A %	G %	T %	Probability
159	16	83		0.994512
160	16	83		0.994512
277	10		90	0.90298
278	10		90	0.90298
280	90	10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain