SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9370

Length: 3541 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9370
AACAAATGCCATGCCGGAACCTGTCGTCCAGGTGCCATTACTCGAGAAAGGAAAGGAAGCTTTGGAGGAGATTAACAAACAAATGGGACTTGCTTTTGATGATTTTGACTTGGAGTATTACATGAGGCTTTTTCGAGATGATATCAAGCGCAACCCCACCAATGTAGAACTTTTTGACATTGCTCAGTCTAACAGTGAGCATTCCAGACACTGGTTTTTCCAGGGAGATTTAGTCATTGATGGACAAGTTACTGTCAGCAATCTAATGAGAATTGTAAAAGATACACTGAAAGCGAATCCAAACAACTCTGTGATTGGCTTTAAAGACAACTCAAGTGCAATCAGAGGCTTTCCAGTACAGGCATTAATTCCAGTATCAGCAGGCTCAACCTCTCCACTGAGTACTGTTCATCGTGACTTTGACATTCTTTTCACTGCAGAGACTCATAATTTCCCTTGTGCGGTTGCTCCTTTTCCAGGTGCAGAAACTGGAGCAGGAGGGCGCATACGAGATACCCATGCAACAGGGATTGGATCTATTGTGGTTGCTGCAACTGCTGGTTATTGTGTTGGAAATTTACAGATTGAAGGCTCTTTTGCTCCATGGGAGGACCCTTCGTTTTCTTATCCATCAAATTTGGCATCTCCGCTGCAGATCCTAATTGATGCAAGCAATGGTGCATCAGATTATGGCAACAAGTTTGGAGAGCCCTTGATTCAGGGGTACACACGAACATTTGGGATGAGGTTACCAAATGGTGAGCGGCGGGAATGGCTTAAACCCATCATGTTCAGTGCAGGAATTGGCCAGATTGACCATCAGCATATAGAGAAAGGAGAACCTGATGTCGGAATGCTTGTTGTCAAGGTTGGTGGTCCTGCATATTGCATTGGGATGGGAGGTGGTGCAGCATCCAGCATGGTAAGTGGGCAGAATGATGCAGAGTTGGACTTTAATGCAGTACAACGAGGGGATGCAGAGATGGCTCAAAAGTTGTATCGTGTTGTTCGTGCATGTGTGGAGATGGGCAACAAGAATCCTATTGTGAGCATTCATGATCAAGGTGCTGGAGGCAACTGTAATGTTGTTAAAGAAATAATCTATCCCAAGGGAGCAGAGATTGACATAAGATCCATAGTTGTTGGTGATGAAACGATGTCTATTATGGAGATATGGGGTGCTGAATACCAAGAACAGGATGCGTTACTGATAAGACCTGAAAATGAGAGATTGCTACGCTCAATCTGTGAAAGAGAAAGGGTGTACATGGCTGTAATTGGCAAAATCAGTGGTGATGGGAGAGTTGTACTCGTTGATAGCTTGGCAATGGAGCATTCTGTCTTAAATGGTCTACCCCCGCCTCTTCCAGCAGTTGATCTCGACCTTGAGAAGGTACTTGGTGATATGCCAAGAAAATGTTTTGAGTTAACACGGAAAGTCCAACCATTGGAGTCTCTTGACATTGCTCCAGGAATAACGGTTTTGGATGCCCTCAGACGAGTTCTTCACCTTCCATCTGTGTGTTCAAAGCGCTTCTTAACAACTAAGGTTGACCGTTGTGTGACAGGTCTTGTTGCACAGCAGCAGACAGTTGGCCCTCTGCAACTTCCGCTTGCAGACGTTGCTGTTATTGCTCAGACATATACTGGGTTAAGTGGTGGTGCCTGTGCAATTGGGGAGCAGCCAGTAAAGGGTTTACTGAATCCAAAGGCAATGGCTAGGCTAGCAGTGGGTGAAGCTCTGACAAATCTTGTTTGGGCTAAGGTTACTTCACTGAAGGATGTCAAAGCTAGTGGAAATTGGATGTATGCTGCAAAGTTAGATGGAGAAGGTGCGGCCATGTATGATGCAGCTCTTGCTCTTCGGGATACAATGATAGAACTTGGGATAGCAATAGATGGTGGCAAAGATAGCCTTTCTATGGCAGCACAAGCTGCAGGAGAGACTGTCAAAGCTCCTGGGAATCTAGTAATCAGTGCTTATGTGACTTGTCCGGATATTTCAAAGACTGTTACACCAGACTTGAAGCTAGGAGATGATGGAGTTCTACTTCATGTTGATTTGGCTAAAGGAAAACACCGTTTAGGTGGTTCTGCCCTTGCTCATGTTTTTGATCAGATTGGTGACGTTTGCCCAGACCTTGATGATGTTTCAGATCTCAAGAGAGTCTTCAATGCAGTCCAGGACCTGGTTGGAGAGAATCTTGTTTCAGCTGGTCACGACATTAGTGATGGGGGTATAGTTGTATCTCTGTTGGAGATGGCTTTTGCAGGAAACTGTGGGATGAAAGTTAACCTAAGCTCTAAAAGTGCTGGTATATTTGAAGTACTATTTGCAGAAGAACTTGGCCTTGTCCTCGAGGTTAGCCGTGCCAATCTTGATGTCATTGCCAAGAAACTCAATGATTCCGGTGTTCTGTTTGAGGTTATTGGACAAGTCACTTCATCTCCTTCTATAGAGGTGTCTGTTAATGGCACACTACATCTTAATGAAAAAACATCATATCTTAGGGATTTGTGGGAGGAGACAAGCTTTTTGCTGGAAAGATGCCAGCGGCTAGAGTCATGTGTTCAGAGAGAGCAAGAAGGACTGAAAAACAGACATGCACCTGCATGGGCATTGTCATTTGTGCCCAGATCTACAAATGAAAAATTCATGGTTTCAAAGTCAAAGCCAAAGGTGGCTATTATTCGAGAAGAAGGTAGTAATGGTGACAGGGAAATGTCAGCTATGGTTTATGCTGCGGGCTTTGAACCATGGGATGTGACAATGTCAGATCTTCTGAATGAAAGAGTGACTCTGCAAGATTTCAGAGGGATAGTCTTTGTTGGAGGGTTTAGCTATGCAGATGTGTTAGATTCCGCTAAGGGATGGGCTGCCACAATACGGTTCAATGACTCTCTTCTTAAACAGTTTCAAGAATTTTATGACCGACCAGACACATTCAGTCTTGGTGTGTGCAATGGATGTCAGCTGATGGCTCTTCTTGGTTGGGTACCTGGGAAAGAAGTAGGAGGAGTGCTTGGTGCCGGTGGTGATGACTCACAACCTCGATTTATTCACAATGAATCAGGCCGCTTTGAGTGCCGTTTTAGCTCTGTGAGGATAGTGGAGTCGCCTTCAATAATGTTGAAAGGCATGGAAGGTACTACAGTTGGAATTTGGGTTGCTCATGGAGAAGGAAGAGCATTCTTTCCCAGGCAAGAGATTTTGCAACATGTAACAGAATCAAATTTAGCCCCAATTAGGTACTGCGATGATGATGGATATGTGACTGAGGAATATCCATTCAATCCTAATGGGTCCCCACTTGGTATTGCAGCAATATGTTCTCCAAATGGAAGGCATCTAGCTTTGATGCCACATCCCGAACGTTGCTTTCTCATGTGGCAATTCCCTTGGTATCCTAGAGAATGGGAACTTGATCCCAAGGGTCCTAGCCCTTGGTTAAAAATGTTCCAAAATGTACGTGAATGGTGTGAATATATTTGATTTATTGTAAATTTTGGAATTTATAGAAATTCTTGAGCTTCGATTTCC

Ace file of the UniGene sp_v2.0_unigene9370 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[F] COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	phosphoribosylformylglycinamidine synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylformylglycinamidine synthase.	EC:6.3.5.3	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	microgametogenesis	GO:0055046	Biological Process	86%
Blast2go	'de novo' IMP biosynthetic process	GO:0006189	Biological Process	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	86%
Blast2go	transferase activity	GO:0016740	Molecular Function	86%
Blast2go	phosphoribosylformylglycinamidine synthase activity	GO:0004642	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	AIR synthase-related protein	IPR000728	-	-
Sma3	AIR synthase-related protein, C-terminal	IPR010918	-	-
Sma3	Glutamine amidotransferase type 1	IPR017926	-	-
Sma3	Phosphoribosylformylglycinamidine synthase	IPR010073	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABU1

Fln msg: your sequence is longer than subject: 1161 - 410

Fln protein: MPEPVVQVPLLEKGKEALEEINKQMGLAFDDFDLEYYMRLFRDDIKRNPTNVELFDIAQSNSEHSRHWFFQGDLVIDGQVTVSNLMRIVKDTLKANPNNSVIGFKDNSSAIRGFPVQALIPVSAGSTSPLSTVHRDFDILFTAETHNFPCAVAPFPGAETGAGGRIRDTHATGIGSIVVAATAGYCVGNLQIEGSFAPWEDPSFSYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERREWLKPIMFSAGIGQIDHQHIEKGEPDVGMLVVKVGGPAYCIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACVEMGNKNPIVSIHDQGAGGNCNVVKEIIYPKGAEIDIRSIVVGDETMSIMEIWGAEYQEQDALLIRPENERLLRSICERERVYMAVIGKISGDGRVVLVDSLAMEHSVLNGLPPPLPAVDLDLEKVLGDMPRKCFELTRKVQPLESLDIAPGITVLDALRRVLHLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQLPLADVAVIAQTYTGLSGGACAIGEQPVKGLLNPKAMARLAVGEALTNLVWAKVTSLKDVKASGNWMYAAKLDGEGAAMYDAALALRDTMIELGIAIDGGKDSLSMAAQAAGETVKAPGNLVISAYVTCPDISKTVTPDLKLGDDGVLLHVDLAKGKHRLGGSALAHVFDQIGDVCPDLDDVSDLKRVFNAVQDLVGENLVSAGHDISDGGIVVSLLEMAFAGNCGMKVNLSSKSAGIFEVLFAEELGLVLEVSRANLDVIAKKLNDSGVLFEVIGQVTSSPSIEVSVNGTLHLNEKTSYLRDLWEETSFLLERCQRLESCVQREQEGLKNRHAPAWALSFVPRSTNEKFMVSKSKPKVAIIREEGSNGDREMSAMVYAAGFEPWDVTMSDLLNERVTLQDFRGIVFVGGFSYADVLDSAKGWAATIRFNDSLLKQFQEFYDRPDTFSLGVCNGCQLMALLGWVPGKEVGGVLGAGGDDSQPRFIHNESGRFECRFSSVRIVESPSIMLKGMEGTTVGIWVAHGEGRAFFPRQEILQHVTESNLAPIRYCDDDGYVTEEYPFNPNGSPLGIAAICSPNGRHLALMPHPERCFLMWQFPWYPREWELDPKGPSPWLKMFQNVREWCEYI*

Protein Length: 1162

Fln nts: AACAAATGCC_-_ATGCCGGAACCTGTCGTCCAGGTGCCATTACTCGAGAAAGGAAAGGAAGCTTTGGAGGAGATTAACAAACAAATGGGACTTGCTTTTGATGATTTTGACTTGGAGTATTACATGAGGCTTTTTCGAGATGATATCAAGCGCAACCCCACCAATGTAGAACTTTTTGACATTGCTCAGTCTAACAGTGAGCATTCCAGACACTGGTTTTTCCAGGGAGATTTAGTCATTGATGGACAAGTTACTGTCAGCAATCTAATGAGAATTGTAAAAGATACACTGAAAGCGAATCCAAACAACTCTGTGATTGGCTTTAAAGACAACTCAAGTGCAATCAGAGGCTTTCCAGTACAGGCATTAATTCCAGTATCAGCAGGCTCAACCTCTCCACTGAGTACTGTTCATCGTGACTTTGACATTCTTTTCACTGCAGAGACTCATAATTTCCCTTGTGCGGTTGCTCCTTTTCCAGGTGCAGAAACTGGAGCAGGAGGGCGCATACGAGATACCCATGCAACAGGGATTGGATCTATTGTGGTTGCTGCAACTGCTGGTTATTGTGTTGGAAATTTACAGATTGAAGGCTCTTTTGCTCCATGGGAGGACCCTTCGTTTTCTTATCCATCAAATTTGGCATCTCCGCTGCAGATCCTAATTGATGCAAGCAATGGTGCATCAGATTATGGCAACAAGTTTGGAGAGCCCTTGATTCAGGGGTACACACGAACATTTGGGATGAGGTTACCAAATGGTGAGCGGCGGGAATGGCTTAAACCCATCATGTTCAGTGCAGGAATTGGCCAGATTGACCATCAGCATATAGAGAAAGGAGAACCTGATGTCGGAATGCTTGTTGTCAAGGTTGGTGGTCCTGCATATTGCATTGGGATGGGAGGTGGTGCAGCATCCAGCATGGTAAGTGGGCAGAATGATGCAGAGTTGGACTTTAATGCAGTACAACGAGGGGATGCAGAGATGGCTCAAAAGTTGTATCGTGTTGTTCGTGCATGTGTGGAGATGGGCAACAAGAATCCTATTGTGAGCATTCATGATCAAGGTGCTGGAGGCAACTGTAATGTTGTTAAAGAAATAATCTATCCCAAGGGAGCAGAGATTGACATAAGATCCATAGTTGTTGGTGATGAAACGATGTCTATTATGGAGATATGGGGTGCTGAATACCAAGAACAGGATGCGTTACTGATAAGACCTGAAAATGAGAGATTGCTACGCTCAATCTGTGAAAGAGAAAGGGTGTACATGGCTGTAATTGGCAAAATCAGTGGTGATGGGAGAGTTGTACTCGTTGATAGCTTGGCAATGGAGCATTCTGTCTTAAATGGTCTACCCCCGCCTCTTCCAGCAGTTGATCTCGACCTTGAGAAGGTACTTGGTGATATGCCAAGAAAATGTTTTGAGTTAACACGGAAAGTCCAACCATTGGAGTCTCTTGACATTGCTCCAGGAATAACGGTTTTGGATGCCCTCAGACGAGTTCTTCACCTTCCATCTGTGTGTTCAAAGCGCTTCTTAACAACTAAGGTTGACCGTTGTGTGACAGGTCTTGTTGCACAGCAGCAGACAGTTGGCCCTCTGCAACTTCCGCTTGCAGACGTTGCTGTTATTGCTCAGACATATACTGGGTTAAGTGGTGGTGCCTGTGCAATTGGGGAGCAGCCAGTAAAGGGTTTACTGAATCCAAAGGCAATGGCTAGGCTAGCAGTGGGTGAAGCTCTGACAAATCTTGTTTGGGCTAAGGTTACTTCACTGAAGGATGTCAAAGCTAGTGGAAATTGGATGTATGCTGCAAAGTTAGATGGAGAAGGTGCGGCCATGTATGATGCAGCTCTTGCTCTTCGGGATACAATGATAGAACTTGGGATAGCAATAGATGGTGGCAAAGATAGCCTTTCTATGGCAGCACAAGCTGCAGGAGAGACTGTCAAAGCTCCTGGGAATCTAGTAATCAGTGCTTATGTGACTTGTCCGGATATTTCAAAGACTGTTACACCAGACTTGAAGCTAGGAGATGATGGAGTTCTACTTCATGTTGATTTGGCTAAAGGAAAACACCGTTTAGGTGGTTCTGCCCTTGCTCATGTTTTTGATCAGATTGGTGACGTTTGCCCAGACCTTGATGATGTTTCAGATCTCAAGAGAGTCTTCAATGCAGTCCAGGACCTGGTTGGAGAGAATCTTGTTTCAGCTGGTCACGACATTAGTGATGGGGGTATAGTTGTATCTCTGTTGGAGATGGCTTTTGCAGGAAACTGTGGGATGAAAGTTAACCTAAGCTCTAAAAGTGCTGGTATATTTGAAGTACTATTTGCAGAAGAACTTGGCCTTGTCCTCGAGGTTAGCCGTGCCAATCTTGATGTCATTGCCAAGAAACTCAATGATTCCGGTGTTCTGTTTGAGGTTATTGGACAAGTCACTTCATCTCCTTCTATAGAGGTGTCTGTTAATGGCACACTACATCTTAATGAAAAAACATCATATCTTAGGGATTTGTGGGAGGAGACAAGCTTTTTGCTGGAAAGATGCCAGCGGCTAGAGTCATGTGTTCAGAGAGAGCAAGAAGGACTGAAAAACAGACATGCACCTGCATGGGCATTGTCATTTGTGCCCAGATCTACAAATGAAAAATTCATGGTTTCAAAGTCAAAGCCAAAGGTGGCTATTATTCGAGAAGAAGGTAGTAATGGTGACAGGGAAATGTCAGCTATGGTTTATGCTGCGGGCTTTGAACCATGGGATGTGACAATGTCAGATCTTCTGAATGAAAGAGTGACTCTGCAAGATTTCAGAGGGATAGTCTTTGTTGGAGGGTTTAGCTATGCAGATGTGTTAGATTCCGCTAAGGGATGGGCTGCCACAATACGGTTCAATGACTCTCTTCTTAAACAGTTTCAAGAATTTTATGACCGACCAGACACATTCAGTCTTGGTGTGTGCAATGGATGTCAGCTGATGGCTCTTCTTGGTTGGGTACCTGGGAAAGAAGTAGGAGGAGTGCTTGGTGCCGGTGGTGATGACTCACAACCTCGATTTATTCACAATGAATCAGGCCGCTTTGAGTGCCGTTTTAGCTCTGTGAGGATAGTGGAGTCGCCTTCAATAATGTTGAAAGGCATGGAAGGTACTACAGTTGGAATTTGGGTTGCTCATGGAGAAGGAAGAGCATTCTTTCCCAGGCAAGAGATTTTGCAACATGTAACAGAATCAAATTTAGCCCCAATTAGGTACTGCGATGATGATGGATATGTGACTGAGGAATATCCATTCAATCCTAATGGGTCCCCACTTGGTATTGCAGCAATATGTTCTCCAAATGGAAGGCATCTAGCTTTGATGCCACATCCCGAACGTTGCTTTCTCATGTGGCAATTCCCTTGGTATCCTAGAGAATGGGAACTTGATCCCAAGGGTCCTAGCCCTTGGTTAAAAATGTTCCAAAATGTACGTGAATGGTGTGAATATATTTGA___TTTATTGTAAATTTTGGAATTTATAGAAATTCTTGAGCTTCGATTTCC

Fln Alignment:

Contig9370___MAFAGNCGMKVNLSSKSAGIFEVLFAEELGLVLEVSRANLDVIAKKLNDSGVLFEVIGQVTSSPSIEVSVNGTLHLNEKTSYLRDLWEETSFLLERCQRLESCVQREQEGLKNRHAPAWALSFVPRSTNEKFMVSKSKPKVAIIREEGSNGDREMSAMVYAAGFEPWDVTMSDLLNERVTLQDFRGIVFVGGFSYADVLDSAKGWAATIRFNDSLLKQFQEFYDRPDTFSLGVCNGCQLMALLGWVPXXXXXXXXXXXGDDSQPRFIHNESGRFECRFSSVRIVESPSIMLKGMEGTTVGIWVAHGEGRAFFPRQEILQHVTESNLAPIRYCDDDGYVTEEYPFNPNGSPLGIAAICSPNGRHLALMPHPERCFLMWQFPWYPREWELDPKGPSPWLKMFQNVREWCEYI
D5ABU1______________MAFAGNCGMKVNLSSKSTGIFEVLFAEELGLVLEVSSGNLDVIAKKLNAAGVLFEVIGQVTSSPSIEVSVNGTLHLNENMSYLRDLWEETSFLLERCQRLESCVQREQEGLKNRHAPAWALSFVPRFTNEKFMASKSKPKVAVIREEGSNGDREMSAMVYAAGFEPWDVTMSDLLNERITLQDFRGIVFVGGFSYADVLDSAKGWAATIRFNDSLLKQFQEFYERPDTFSLGVCNGCQLMALLGWVPGKEVGGVLGAGGDNSQPRFIHNESGRFECRFSSVRIVESPSIMLRGMEGTTVGIWVAHGEGRAFFPRQEILQHVTESNLAPIRYCDDDGYVTEEYPFNPNGSPLGIAAICSPNGRHLALMPHPERCFLMWQFPWYPREWELDPKGPSPWLKMFQNVREWCEYI

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
992		60		40	1.0
1062	20		80		0.995493
1107			75	25	0.996473
1172		80		20	0.995493
1277		12	87		0.992554
1355	11			88	0.923564
1359			88	11	0.923564
1381	16		83		0.994512
1468		16		83	0.994512
1470		50	16		1.0
1471		33		66	1.0
1473			20	80	0.995493
1475			85	14	0.993533
1476	14	85			0.993533
1561	87		12		0.992554
1580		77		22	0.999999
1581		77	22		0.999999
1589	22			77	0.999999
1590			22	77	0.999999
1591		22		77	0.999999
1592		22	77		0.999999
1594	22	77			0.999999
1595	77		22		0.999999
1599	22			77	0.999999
1601			22	77	0.999999
1602	22	77			0.999999
1631	83		16		0.994512
1685	87	12			0.992554
1686	87	12			0.992554
1687		12	87		0.992554
1689			87	12	0.992554
1769		20		80	0.995493
1792	12		87		0.992554
1808	62		37		1.0
1843	14		71		0.984337
1887		75	25		0.996473
1985	66		33		1.0
1988	33		66		1.0
2063		60		40	1.0
2084	75		25		0.996473
2243	50	50			1.0
2277	25		75		0.996473
2278			50	50	1.0
2327	75		25		0.996473
2383		25		75	0.996473
2444			66	33	0.997452
3141		33	66		0.997452
3258	16	83			0.994512
3438	25			75	0.996473
3440		50		25	0.995533
3443			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain