SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9358

Length: 865 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9358

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9SLY6_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	62%
Blast2go	zinc finger	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	78%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Homeobox protein, antennapedia type, conserved site	IPR001827	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, MIZ-type	IPR004181	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Haemerythrin/HHE cation-binding motif	IPR012312	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HFM8

Fln msg: Separated hits, possible frame ERROR between 532 and 537, Distance to subject end: 1012 aas, your sequence is shorter than subject: 227 - 1237

Fln protein: MATPLTGLQHAQGLLAPIERSIGFVDPSKVFVWHSALKSPILVFLYFHKAIRGELATLHREALAIEKESDGEIRTLLDRYHFLRVIYKHHSNAEDEVIFPALDMRVKNVAHTYCLxxxKGESDLFDQVFGLLNSALKDNDHGSMKLRRELVCCTEAIQTSLCQHMSKEQEQVFPLLIQQFSFEEQAALVWQFMCSIPVNLMEEFLPWLTSYLSSDERQDMIKCMHEI

Protein Length: 228

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGAGGGAAAGGAATGGATGAAGGAGAGGTCGGTTGAGAAGGCTGGATAACTATCGTTCGGCTCTGCAGGTTCATGAAATTTGGGGATCCCGATTACTGGGAATGGTATTTGGCAATTTTGTTTTGTTGCAAAAAACCTGGTTTCTAAGGTGTTAGAAGCGGT_-_ATGGCTACTCCTTTGACAGGGCTTCAGCACGCGCAGGGACTCTTGGCTCCCATCGAACGGTCAATAGGCTTCGTGGATCCCTCGAAGGTTTTTGTGTGGCATTCAGCTCTCAAATCCCCAATTTTGGTTTTTCTCTACTTTCACAAGGCCATCAGAGGCGAGCTCGCCACGCTTCACAGGGAGGCGCTGGCTATTGAGAAGGAAAGCGACGGCGAGATTCGAACCCTGCTCGATCGTTACCACTTCCTGCGGGTCATTTACAAGCACCACAGCAATGCTGAGGACGAGGTCATCTTTCCAGCTCTTGATATGCGTGTAAAGAATGTGGCTCACACATATTGTCTGGAxxxxxxTAAAGGGGAAAGTGACCTGTTCGATCAGGTGTTTGGATTGTTAAATTCAGCCTTAAAGGACAATGACCATGGTTCCATGAAATTGCGCCGGGAACTTGTTTGCTGCACGGAGGCCATTCAGACGTCTCTTTGCCAACATATGTCAAAAGAACAGGAACAGGTTTTTCCACTGCTTATACAACAATTTTCATTTGAAGAACAGGCTGCATTAGTGTGGCAGTTCATGTGCAGCATCCCTGTGAACCTGATGGAAGAATTTCTTCCATGGCTTACCTCTTATCTTTCTTCTGATGAACGCCAGGATATGATCAAGTGTATGCATGAAATAGT

Fln Alignment:

Contig9358___MATPLTGLQHAQGLLAPIERSIGFVD--PSKVFVWHSALKSPILVFLYFHKAIRGELATLHREALAIEKESDGEIRTLLDRYHFLRVIYKHHSNAEDEVIFPALDMRVKNVAHTYCLExxKGESDLFDQVFGLLNSALKDNDHGSMKLRRELVCCTEAIQTSLCQHMSKEQEQVFPLLIQQFSFEEQAALVWQFMCSIPVNLMEEFLPWLTSYLSSDERQDMIKCMHEI
F6HFM8______________MATPLTGLQHRDGGLGLMAGPANQMDSSPSKSCLKSSALKSPILIFLFFHKAIRSELDGLHRAAMDFATNQDSDINPLLERYHFFRAIYKHHCNAEDEVIFPALDRRVKNVARTYSLExxEGESALFDQLFELLNSKTQNEE----SYRRELALCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLIWQFLCSIPVNMMAEFLPWLSSSISSDEHQDMHKCLCKI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
53	33	66			0.997452
56		33		66	0.997452
253	44		55		1.0
392		44		55	1.0
411		55		44	1.0
476		87	12		0.992554
610		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain