SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9336

Length: 1219 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9336 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RR35_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	83%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	NLI interacting factor	IPR004274	-	-
Sma3	Ysc84 actin-binding domain	IPR007461	-	-
Sma3	Cleft lip and palate transmembrane 1	IPR008429	-	-
Sma3	Dullard phosphatase domain, eukaryotic	IPR011948	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMY3

Fln msg: your sequence is shorter than subject: 286 - 489

Fln protein: NVFCRACSRGKCLLPVKFRERDPQRVCDRCYERLEPLQRLLIRQVSNAAQVAKHDVMDWTCMRGWLNTPLGLSMEQEIYKTSIVLRSYCQIARLKPERSIPVSVLRGANGLAIFTVAKAGVGITYKLGTGIVIARRENGSWSAPSAITSFGLGWGAQIGGELTDFVIVLRNFEAVKAFSSRVHFSLGGGLSVAAGPLGRAVEADLRAGDEGTTACYTYSSSKGAFLGVSLEGNIVTARTDTNMRFYGDPYLTPTDILFGSVERPRAATPLYNALHDLFQSLGKAL*

Protein Length: 287

Fln nts: AATGTATTTTGCAGAGCATGTTCAAGGGGAAAATGCCTTTTACCTGTAAAATTCAGAGAGAGAGACCCACAAAGGGTTTGTGATAGGTGTTATGAGAGGTTGGAACCGTTGCAGAGACTTTTGATAAGGCAGGTAAGCAATGCAGCTCAGGTAGCAAAACATGATGTGATGGACTGGACTTGTATGAGAGGATGGCTGAATACGCCTTTGGGCTTGTCAATGGAGCAAGAAATTTACAAGACTAGCATTGTTTTGAGAAGTTATTGTCAGATTGCAAGGTTGAAGCCAGAAAGGTCTATACCTGTTTCTGTTTTACGAGGAGCTAATGGATTAGCCATCTTCACTGTTGCAAAAGCTGGTGTGGGCATCACTTACAAATTAGGGACTGGTATAGTTATTGCCAGAAGAGAAAATGGTTCCTGGTCAGCACCATCTGCAATAACATCATTTGGTTTAGGATGGGGTGCACAGATTGGTGGAGAGCTTACAGATTTTGTTATTGTGCTCCGCAATTTTGAAGCAGTCAAAGCTTTTAGTAGTCGTGTGCATTTCTCGTTAGGGGGTGGTTTAAGTGTTGCAGCTGGGCCATTGGGAAGAGCGGTGGAGGCAGATCTTCGAGCTGGAGATGAAGGAACCACTGCTTGCTACACATACAGCAGTAGCAAAGGTGCCTTTCTTGGAGTATCACTTGAGGGAAACATAGTTACTGCACGAACAGATACGAATATGCGGTTCTATGGTGATCCATATCTTACACCCACTGACATTCTCTTTGGTTCAGTTGAAAGGCCAAGGGCAGCGACACCTCTATACAATGCTTTGCATGATCTTTTCCAGAGTTTGGGAAAAGCATTATGA___GAAAAGCATTACCTGTAACTTTGTAAATATTCAGTACAATTTTATAATATTTTAAAAAGTGTTTGGAACTCTGAAGATCAGGATAGTTGTGGACCATGGAAAGCCAGTTATTTAGTCTGTAATGCAGCAGTGAAATGCCTTAAAGGTATTATAATGCCATATAATGATATTTGAAAAATACTACTTAAAAGATGTATCAATTAATTTGCCACTCAAGAAAAGCAGTTGAAGCTTGAAACAATGTACAGCAACCCTCTAAATTTTGCTTGAATGAATAGTTTGAAGTTTACGGTTACCTGAAAGTATTGTAACTGTACAAAATCATCTGTAATAAATGTGCAATGAAAGGACTTGTTCACAG

Fln Alignment:

Contig9336___VFCRACSRGKCLLPVKFRERDPQRVCDRCYERLEPLQRLLIRQVSNAAQVAKHDVMDWTCMRGWLNTPLGLSMEQEIYKTSIVLRSYCQIARLKPERSIPVSVLRGANGLAIFTVAKAGVGITYKLGTGIVIARRENGSWSAPSAITSFGLGWGAQIGGELTDFVIVLRNFEAVKAFSSRVHFSLGGGLSVAAGPLGRAVEADLRAGDEGTTACYTYSSSKGAFLGVSLEGNIVTARTDTNMRFYGDPYLTPTDILFGSVERPRAATPLYNALHDLFQSLGKAL
B8LMY3______________LFCRACSRGKCLLPVKFRERDPQRVCDSCYERLEPLQRLLIRQVSNAAQIAKHDVMDWTCMRGWLNTPLGLSMEQEIYKSSNVLRSYCQIAMLKPERSIPVSVLRGANGLAIFTVAKAGVGITYKLGTGIVIARRENGSWSAPSAIASFGLGWGAQIGGELTDFVIVLRNFEAVKAFSSRVHFSLGGGLSVAAGPLGRVVEADLRAGDEGTTACYTYSSSKGAFLGVSLEGNIVTARSDTNMRFYGDPYLTPTDILFGSVERPRAAAPLYNALHDLFQSLGKTI

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1044		88	11		0.923564
1048		11		88	0.923564
1050	11	88			0.923564
1052			11	88	0.923564
1053		88	11		0.923564
1054	88			11	0.923564
1057		11		88	0.923564
1058		88	11		0.923564
1060		11		88	0.923564
1110		85		14	0.993533

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain