SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9326

Length: 1250 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9326

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	late embryogenesis abundant protein-like protein [Arabidopsis thaliana] dbj\|BAB10109.1\| root cap protein 2-like protein [Arabidopsis thaliana] gb\|AAZ23915.1\| At5g54370 [Arabidopsis thaliana] gb\|AED96489.1\| late embryogenesis abundant protein-like protein	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	late embryogenesis abundant protein	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Root cap	IPR009646	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAU8

Fln msg: your sequence is shorter than subject: 299 - 342

Fln protein: DDCPERIPENPDVKGCYVDCSIDYNAICRNRRANCSGVGAACYDPRFIGGDGIMFYFHGKSNQDFSLVSDDALQINAHFIGRRPEGRTRDYTWVQSLGMMFGTHTFTVGANKVSKWDDGVDHFFFAFDKQPLTVPVGYRSLWKAPSGDLIVQRNEEHNGVVVLIPEMVEILVRVVPVTKEDDRVHNYQIPSDDCFAHLETEFKFFTLSSNVEGVLGQTYRPNFRNPVKVGVPMPIMGGENKYRTSSLLTADCKACIFMPNSSPARETENSHQVIIKAAATSLDCTGKLGDGQGIFCRR*

Protein Length: 300

Fln nts: GACGATTGCCCTGAACGTATACCAGAGAACCCCGATGTCAAGGGCTGCTACGTAGATTGTTCCATTGACTACAATGCCATCTGTAGAAACCGAAGAGCAAACTGTTCAGGAGTTGGAGCTGCTTGCTATGACCCTCGCTTCATAGGAGGAGATGGCATCATGTTCTACTTCCATGGAAAGAGTAACCAGGATTTCAGCCTCGTGTCTGATGATGCCTTGCAAATCAATGCTCATTTTATTGGCCGCAGGCCTGAAGGGAGAACCAGAGATTACACCTGGGTTCAATCCCTCGGCATGATGTTCGGCACTCATACCTTCACAGTGGGTGCAAATAAGGTATCCAAATGGGATGACGGGGTCGACCATTTCTTCTTCGCCTTTGATAAACAGCCCCTCACCGTTCCTGTGGGATATCGTTCGCTCTGGAAGGCACCGTCGGGCGACCTAATCGTCCAACGAAACGAAGAGCACAATGGCGTTGTCGTGTTGATCCCGGAGATGGTGGAGATATTGGTGAGGGTGGTGCCCGTCACCAAGGAGGACGACCGCGTTCACAATTATCAGATTCCATCTGACGATTGCTTTGCTCATCTCGAAACCGAGTTCAAGTTCTTCACACTCTCTTCAAATGTGGAAGGTGTTCTTGGACAAACTTATAGGCCAAATTTCAGAAACCCAGTGAAGGTGGGAGTGCCGATGCCTATCATGGGTGGGGAGAACAAGTACCGTACCTCGTCTCTTCTCACGGCAGATTGCAAGGCTTGCATTTTCATGCCGAATTCTTCACCGGCCCGTGAGACTGAGAACTCGCACCAAGTTATTATAAAAGCAGCAGCAACCAGCTTGGACTGCACCGGAAAGTTGGGGGACGGGCAGGGTATCTTCTGCCGAAGATAA___ATACACTTCCCATGCTTCCATGTTTGAATAAGGAAACTGTCTTCCATTTCTAGCTGTTGAATCTTTATCTATAGTTCACCTATTTATAAATTGGTCACTGTCAGCTGGTCACTGTCGGCTCTGGGTCTTGTAGCAGTATTCGCAGTTTTTCGCGCTCCATCTCAGTTCTGGTCAATGACACTGTGATACCCAGTCGGACGTTGCAGTATTCGCAGTTATATTGTTATAGTAGGCCGTTGCTAGGAGATGGCCTGGTCTGCCTCGTTCTGATTTCCATTAGGTCATCGGGTACGGATGTGTGGGCTTTAATTGCTTCGATAATTTGGGATGATGGGGATATGTCCTCCAGTTTG

Fln Alignment:

Contig9326___CPERIPENPDVKGCYVDCSIDYNAICRNRRANCSGVGAACYDPRFIGGDGIMFYFHGKSNQDFSLVSDDALQINAHFIGRRPEGRTRDYTWVQSLGMMFGTHTFTVGANKVSKWDDGVDHFFFAFDKQPLTVPVGYRSLWKAPSGDLIVQRNEEHNGVVVLIPEMVEILVRVVPVTKEDDRVHNYQIPSDDCFAHLETEFKFFTLSSNVEGVLGQTYRPNFRNPVKVGVPMPIMGGENKYRTSSLLTADCKACIF--MPNSSPARE--TENSHQVIIKAAATSLDCTGKLGDGQGIFCRR
D5AAU8______________CPESCPE------CHLSCKFCGMAHC----PKCDRVGSVCQDPRFIGGDGQMFYFHGYKDSDFCLVTDKGLHINAHFIGKRTANRTRDFTWVQALGILFDTHKFYVGSKRVGKWHSSVDQFVLYFDGYSISLPPGEGSKWVSPNRELSIVRVENANYLNVEITGLLNSSIGIVPVTKEDSRVHKYEITDADCFAHLELNFDFFKLTDSVSGVLGQSYAPSFVNPVKKGVPMPLMGGEKNFMASSIFTPDCEAVQFKAMHHSSIVGSGLGRNPHRLGMPSAV----CSSNGSEGSGFVCKR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
746	25	75			0.996473
747			75	25	0.996473
749		75		25	0.996473
1026		33		66	0.997452
1093	33		66		0.997452
1094			66	33	0.997452
1137		66	33		0.997452
1141			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain