SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9310

Length: 1686 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene9310 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO	-	-	46%
FL-Next	sp=Probable lysine-specific demethylase JMJ14; Arabidopsis thaliana (Mouse-ear cress).	-	-	36%
Blast2go	probable lysine-specific demethylase jmj14-like	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Zinc finger, C5HC2-type	IPR004198	-	-
Sma3		IPR013129	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-
Sma3	FY-rich, N-terminal subgroup	IPR018518	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q8GUI6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 108 aas, putative chimeric sequence, your sequence is shorter than subject: 293 - 954

Fln protein: IGRFSMHGREQLIVLKPENTKVCTMGESHTKHFDFMSGKDYSVGSGWKSNASIHPTFSENVSTQVGSSQTFSATQLQGLLPEGSDMSPGDSVDLRSAGNTAVTVNFHPSKAYTSMATDTLDMNMINGSDFSFNHMSNERKAQSVFVSSSSAGTFNSAKLIQNKGPRIAKFAHVQKSSYDVELIAIGVMCPDKPWHNSQTIFPKGFKSRVKFYSVVDPTQMCYYVSEVLDACHVGPLFKVIMEGCSTEVFIQDSVYKCWELVHGEVESRNYETAQPWQTKSSCFAASREPKWS*

Protein Length: 294

Fln nts: AATTGGTAGGTTCTCCATGCATGGTAGAGAACAGCTTATTGTTTTAAAGCCAGAAAACACAAAAGTATGTACAATGGGTGAAAGCCATACTAAACACTTTGACTTCATGAGTGGGAAAGATTACTCTGTTGGATCAGGCTGGAAAAGTAATGCAAGTATACATCCAACCTTTTCAGAAAATGTTTCAACTCAGGTGGGCTCTTCTCAAACATTTTCGGCAACACAGCTGCAAGGTTTATTACCTGAAGGAAGTGATATGTCTCCAGGAGATTCCGTCGATTTAAGATCTGCAGGCAACACCGCTGTCACTGTGAATTTCCATCCTTCCAAGGCATATACCAGCATGGCAACCGACACTCTGGATATGAACATGATTAATGGATCAGACTTTTCTTTCAATCACATGAGCAATGAAAGAAAAGCCCAATCTGTATTTGTATCAAGTTCTTCAGCTGGAACATTCAATTCAGCAAAGTTAATCCAGAACAAGGGTCCTCGCATTGCTAAGTTTGCCCATGTTCAGAAAAGCAGTTATGATGTTGAACTCATAGCTATTGGAGTTATGTGTCCTGACAAGCCCTGGCACAACAGCCAGACAATATTTCCCAAAGGGTTTAAAAGCCGGGTGAAATTCTACAGTGTTGTAGATCCAACACAGATGTGCTATTATGTTTCGGAAGTTCTGGATGCTTGTCATGTTGGACCTCTGTTCAAGGTTATAATGGAGGGATGCTCGACAGAAGTTTTTATACAAGATTCAGTTTACAAGTGCTGGGAACTTGTGCATGGGGAGGTTGAATCAAGAAATTATGAGACAGCGCAGCCTTGGCAAACAAAATCTTCCTGCTTTGCAGCCTCCAGGGAGCCTAAATGGTCTTGA___TATGTTTGGGTTTACCTCACCTTTGGTCATTAAGGCCATAGAGGAACTTGTTCGTGATCACAAATGTGAAGAATATTGGTGCAGAAGGCCAAGCAATGCAAGTAAGAGACAGTATCCTGAGACGAATGATATATGTGAGAAACATTACAAAACTTCAAACTTTCAAAGCGGTGGTCAATCCAACCCTGCAGTGTTGAAGAATTTTCTGGAGGAGATTGATAACAGGGGCAAATCAAGCATAGTCAACCTGCAGCAAGCGGAATCAAACCCTCTAAATCTTACATCACCTGAAAAAATATATATGGTTCTTAAGGGTTTTTTCAGAAAAGCAAATCCCGATGAACTACGAACATTGCATAAAGTTTTGAGTGATGAATCGTGGAGCACAAATTGGAGGGGAGCACTTCGGGCTCTTGTAGAAGAGCTTCAAAATATGTGAATATAAAAAACCTAATTTTGGGCTTTTGGATTTTTCTTTACCAAGAGGCCCCCACTCAAATGAGTCTCAAGTACTTTGTATATCTAACCATCCATCATTTAGCATTCTTTCATCAGCATGCAGCTGCTCCTTGTTAAGCAATTTTAACATTGGAATGTCATTGCTTTTCAAATAGGCTCTGGGTAGATCTTGCCCCTTCATTGTTTCTCCACATGGAGATATGACAAATCCGAGGATAAATCATAATATCTTGAGAGGAGTTGAAATCAATTTCAAAAGATCTTTACATGTATTATATGTTTTTGTAAAATAGTCACGGAGTGCTCATGATGAGCACTTTAGTCTAGAGGTATATTTACAATCAATA

Fln Alignment:

Contig9310___SDMSPGDSVDLRSAGNTAVTVNFHPSKA-YTSMATD---TLDMNMINGSDFSFNHMSNERKAQSVFVSSSSAGTFNSAKLIQNKGPRIAKFAHVQKSSYDVELIAIGVMCPDKPWHNSQTIFPKGFKSRVKFYSVVDPTQMCYYVSEVLDACHVGPLFKVIMEGCSTEVFIQDSVYKCWELV
Q8GUI6______________SDLTSNKEVQLKQDGDSDVNRHGHESERNHVHGITDKSAVTDVKLGVGGKFDEKKISVESQNPH---SVSDVGCSELAKKVDGCLGGKDQNAATNRLSLSVELLSSGSLVVKKLWCSKQAIYPKGFKSRVKFLSVLDPTNLTNYISEVLDAGLLGPLFRVSVEDYPTENFSNVSAEKCWQMV

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
316	16		83		0.994512
317		16	83		0.994512
318	16		83		0.994512
322	16			83	0.994512
323	16	83			0.994512
324			33	66	1.0
325			33	66	1.0
326			66	33	1.0
327	16	16	66		0.988813
328	33			66	1.0
329	83	16			0.994512
330	66		33		1.0
332	25	25	50		0.995533
333	75		25		0.996473
336	66			33	0.997452
337	66	33			0.997452
339		66	33		0.997452
340	33	66			0.997452
341	66		33		0.997452
342	66			33	0.997452
343	75		25		0.996473
345		25	75		0.996473
346	25	75			0.996473
347		75	25		0.996473
349	75	25			0.996473
352	75		25		0.996473
353			25	75	0.996473
355	75	25			0.996473
356	25		75		0.996473
357		25	75		0.996473
358			25	75	0.996473
359	25			75	0.996473
360		25		75	0.996473
361			25	75	0.996473
549		10	90		0.90298
551		10		90	0.90298
607			14	85	0.993533
608	14	85			0.993533
609			14	85	0.993533
611		85	14		0.993533
616		85	14		0.993533
617		14		85	0.993533
621	14		85		0.993533
625		14		85	0.993533
626	14		85		0.993533
629		11		88	0.923564
630			11	88	0.923564
897		28		71	1.0
899		50		50	1.0
900	33			16	1.0
903		80		20	0.995493
1020	75		25		0.996473
1336	80		20		0.995493
1419		60		40	1.0
1436	50			50	1.0
1447			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain