SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9307

Length: 2420 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9307
GAACCACGTTTTCTGTTTCGAAATATCCTTCAGAGGCCCCGTCACAAAACCTCCGGTGAGGTTGTAAACATTATTGGAGATTTCGATCTTGGATTGATGAAGTTCTTTGATTTTACACGCTCAACGCTACGATCAGCTTTTGACAGCAATGTTGTGTATCAATTTGAGACAATGGAATATATTTTCGACTATGCATTTGAGCGAATGGGAGTTGAAGGTGCACAGGTGGAGCATCCCATTTTAATGACCGAGTGCCCCTATAATCCACTCCAGTCTCGTAGCAAGATGGCAGAGCTTCTTTTTGAGACATATGGTATACCTTATTTAGCTTTTGGAGTTGATGCTGCATTCAGCTATAAATACAATCAGCAATTGGGAAATTGTGGTAGTGATGGTCTAGTCGTATGTGCAGGCTTTACCACGAGCCATGTTATTCCTGTTCTAAAGGGTGAGCCTGTTATGGAAGCATGTAGCAGAACTAACATTGGTGGATACCACATAACTGACTATATGAAACGACTTCTTTCTCTTGAATATCCTCGTCATGTTGGGAGCATTACTTGGGAAAAGGTTGAGGAACTGAAAACAAGCCATTGCTATATAGCACCAGATTATCATTCAGAGTTGGATATCTTTCAGAAAGGTTCAAAGGAGGCTGAAGAGAAAACTAGACATTGGCAACTACCTTGGGTTCCATCTCTTCCAGAGGAGGAGCCATCAGAAGAAGAGCTCGCAAGGAAGGCTGCTATCAAGGAAAAGCAAGGACAACGCTTACGTGAAATGGCTGCTGCAAAACGATCTTCCAGAATTGCAGATTTAGAAAATGAATTGCAGGGATATGAACAGGTCCTGCAACAGTTGGATAGCCTGGACGAATCTGAGCAAGCTTCATTTTTGATGGAGACTGGTTATAGTTCAAGGCAGGAAATTGAAAATGCTGCTGCAAAAGCCACAGCGGCATTGCGGAAGGCCAAGGGTGAACCCATTGAAGTGGAGAAGGAAAAGGATGATTTACCATTGGAAGAAAGATATCCTCTTATCAACATCCCTAACAGTATGCTGACGACTGAGCAGATAAAAGAGAAAAAGAGACAGGTATTCCTTAAAACAACTTCTGAAGGTCGTGCAAAGGCAAAACAAAAACGCCAAGAGGAGGAATTGCAACGGGAAAGGGAAAATCAGCAAGATGAGGAAAGGCGCTTGGAAAACCCTGAGCTTTACCTGGAACAGTTACGTGCAAAGCAAGCAGAACTTGCTGCCAAAGTTGAGCAACGAAAGCGTCTGAAGACAAGTGCTCTTTCTCGTGCAAACAACATGGGCAATATAATTGGAGGTGTCGGGCGTGGTGAAAGACTTAATGCAGCACAGAGGGAGCGCATGAGACTTTTGACAACTGCTGCTTTTGATCGGGGTAAGGGTGAAGATACATTTGGAATGAAAGATGAAGACTGGCAACTATACAAGAAAATGAGCAAGGACAATGATGATGATGAGGGGCCAGATGAGGGTGAGGCAGAACTTGCTCGTATAAATGCCCGTCTTCAGGAAATAGACCCTACATTCACATTTGCATCAAATGATCCTATGGCAACCCAACCTGCTGTTGAAGTACAGCAACATCACCAACTTACTGCAGAGGACTTCCGCATCACACTTGGGGTTGAAAGATTCAGGTGCCCAGAGATTTTATTTCAGCCTCAAATGATCGGTGTTGATCAGTGTGGAATTGATGAAATGATAGGAATCTCAGTCCGAAGATTGCCTTCTAACTGTGCAGATGAAATTGTGAATGGTACAATTCTATTAACTGGTGGGTCTTCACTTTTCCCTGGGTTTGATGCCAGGCTGCAAGCAGAGGTACAGAAAACAAGGCCTCTAGGGTCTACAGTGAAGTTAGTAAGGGCAGCTGATCCAATGTTGGATGCATGGCATGGAGCATCAAATTATGCTGTCTCTCCACTCTTTACTAAGTATTCATTTAGTAGAGAAGATTTCATGGAGAAGGGTGAAGATTGGCTTCGGAAATTCAAAATAAACTATTCTTTTAGTGCTTAGATGTCCTTGGTAGAATAACCTTCTTTTGGCCATATTCAGTTCTCACGTTTGTAAATTTTTGTATTTTGGTAGTAGTAAGCTGCACACCTGCAGTGGGAGTGAGACAGCCCAGTCAAGGCAACGTCTCAAGGATTTGTGAAATACCTCCAACATGCCAATTTTTGAACCCTTACATTATCAAAGATCAATTTGGGTCAATACCATTCAATTATAAAAAGCATCATATTCTGGAATGTTTTTGAAAGTTCTGACAATGTCTATAGAAAGCAATTCTCATTAAACTGTGCCAAATCTTACCGAGCAACAAACAGATAATAACAACAAATGAAACCAGAAAAAAGAGACAGATAACCTGTTCTTTGAAG

Ace file of the UniGene sp_v2.0_unigene9307 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	actin-related protein 5 [Arabidopsis thaliana] sp\|Q940Z2.2\|ARP5_ARATH RecName: Full=Actin-related protein 5 dbj\|BAB03145.1\| actin-like protein [Arabidopsis thaliana] gb\|ACV53017.1\| actin-related protein 5 [Arabidopsis thaliana] gb\|ACV53018.1\| actin-relate	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	actin-related protein 5	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	75%
Blast2go	multicellular organismal development	GO:0007275	Biological Process	75%
Blast2go	actin filament-based process	GO:0030029	Biological Process	75%
Blast2go	DNA repair	GO:0006281	Biological Process	75%
Blast2go	structural constituent of cytoskeleton	GO:0005200	Molecular Function	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	75%
Blast2go	nucleoplasm	GO:0005654	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin-like	IPR004000	-	0.0	-
Sma3	Actin, conserved site	IPR004001	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NM81

Fln msg:

Fln protein: MLLQKPQRHCGRPRVNPLKWRRKRMIYHWKKDILLSTSLTVC*

Protein Length: 44

Fln nts: GAACCACGTTTTCTGTTTCGAAATATCCTTCAGAGGCCCCGTCACAAAACCTCCGGTGAGGTTGTAAACATTATTGGAGATTTCGATCTTGGATTGATGAAGTTCTTTGATTTTACACGCTCAACGCTACGATCAGCTTTTGACAGCAATGTTGTGTATCAATTTGAGACAATGGAATATATTTTCGACTATGCATTTGAGCGAATGGGAGTTGAAGGTGCACAGGTGGAGCATCCCATTTTAATGACCGAGTGCCCCTATAATCCACTCCAGTCTCGTAGCAAGATGGCAGAGCTTCTTTTTGAGACATATGGTATACCTTATTTAGCTTTTGGAGTTGATGCTGCATTCAGCTATAAATACAATCAGCAATTGGGAAATTGTGGTAGTGATGGTCTAGTCGTATGTGCAGGCTTTACCACGAGCCATGTTATTCCTGTTCTAAAGGGTGAGCCTGTTATGGAAGCATGTAGCAGAACTAACATTGGTGGATACCACATAACTGACTATATGAAACGACTTCTTTCTCTTGAATATCCTCGTCATGTTGGGAGCATTACTTGGGAAAAGGTTGAGGAACTGAAAACAAGCCATTGCTATATAGCACCAGATTATCATTCAGAGTTGGATATCTTTCAGAAAGGTTCAAAGGAGGCTGAAGAGAAAACTAGACATTGGCAACTACCTTGGGTTCCATCTCTTCCAGAGGAGGAGCCATCAGAAGAAGAGCTCGCAAGGAAGGCTGCTATCAAGGAAAAGCAAGGACAACGCTTACGTGAAATGGCTGCTGCAAAACGATCTTCCAGAATTGCAGATTTAGAAAATGAATTGCAGGGATATGAACAGGTCCTGCAACAGTTGGATAGCCTGGACGAATCTGAGCAAGCTTCATTTTTGATGGAGACTGGTTATAGTTCAAGGCAGGAAATTGAAA_-_ATGCTGCTGCAAAAGCCACAGCGGCATTGCGGAAGGCCAAGGGTGAACCCATTGAAGTGGAGAAGGAAAAGGATGATTTACCATTGGAAGAAAGATATCCTCTTATCAACATCCCTAACAGTATGCTGA___CGACTGAGCAGATAAAAGAGAAAAAGAGACAGGTATTCCTTAAAACAACTTCTGAAGGTCGTGCAAAGGCAAAACAAAAACGCCAAGAGGAGGAATTGCAACGGGAAAGGGAAAATCAGCAAGATGAGGAAAGGCGCTTGGAAAACCCTGAGCTTTACCTGGAACAGTTACGTGCAAAGCAAGCAGAACTTGCTGCCAAAGTTGAGCAACGAAAGCGTCTGAAGACAAGTGCTCTTTCTCGTGCAAACAACATGGGCAATATAATTGGAGGTGTCGGGCGTGGTGAAAGACTTAATGCAGCACAGAGGGAGCGCATGAGACTTTTGACAACTGCTGCTTTTGATCGGGGTAAGGGTGAAGATACATTTGGAATGAAAGATGAAGACTGGCAACTATACAAGAAAATGAGCAAGGACAATGATGATGATGAGGGGCCAGATGAGGGTGAGGCAGAACTTGCTCGTATAAATGCCCGTCTTCAGGAAATAGACCCTACATTCACATTTGCATCAAATGATCCTATGGCAACCCAACCTGCTGTTGAAGTACAGCAACATCACCAACTTACTGCAGAGGACTTCCGCATCACACTTGGGGTTGAAAGATTCAGGTGCCCAGAGATTTTATTTCAGCCTCAAATGATCGGTGTTGATCAGTGTGGAATTGATGAAATGATAGGAATCTCAGTCCGAAGATTGCCTTCTAACTGTGCAGATGAAATTGTGAATGGTACAATTCTATTAACTGGTGGGTCTTCACTTTTCCCTGGGTTTGATGCCAGGCTGCAAGCAGAGGTACAGAAAACAAGGCCTCTAGGGTCTACAGTGAAGTTAGTAAGGGCAGCTGATCCAATGTTGGATGCATGGCATGGAGCATCAAATTATGCTGTCTCTCCACTCTTTACTAAGTATTCATTTAGTAGAGAAGATTTCATGGAGAAGGGTGAAGATTGGCTTCGGAAATTCAAAATAAACTATTCTTTTAGTGCTTAGATGTCCTTGGTAGAATAACCTTCTTTTGGCCATATTCAGTTCTCACGTTTGTAAATTTTTGTATTTTGGTAGTAGTAAGCTGCACACCTGCAGTGGGAGTGAGACAGCCCAGTCAAGGCAACGTCTCAAGGATTTGTGAAATACCTCCAACATGCCAATTTTTGAACCCTTACATTATCAAAGATCAATTTGGGTCAATACCATTCAATTATAAAAAGCATCATATTCTGGAATGTTTTTGAAAGTTCTGACAATGTCTATAGAAAGCAATTCTCATTAAACTGTGCCAAATCTTACCGAGCAACAAACAGATAATAACAACAAATGAAACCAGAAAAAAGAGACAGATAACCTGTTCTTTGAAG

Fln Alignment:

Contig9307___IVQGRKLKMLLQKPQRHCGRPRVNPLKWRRKRMIYHWKKDILLSTSLTVC
A9NM81______________MVRGRKLKVLLQKPRQHCGRPRVNPLKLRRKRMMFQWKKDILLSTSLTAC

SNPs (tot: 90)

Position	A %	C %	G %	T %	Probability
145	50		50		1.0
177	80		20		0.995493
190	80	20			0.995493
267		14		85	0.993533
279		14	85		0.993533
425			85	14	0.993533
554	16			83	0.999991
555			16	75	0.99999
557			16	83	0.999991
559	16			83	0.999991
565	18			81	0.999994
566	18	81			0.999994
567			18	81	0.999994
570	18			81	0.999994
571		18		81	0.999994
573	18	81			0.999994
574	81	18			0.999994
584		87	12		0.992554
586	87		12		0.992554
587	87			12	0.992554
588		87	12		0.992554
589	12	87			0.992554
593		12	87		0.992554
594		12	87		0.992554
597	87		12		0.992554
601		11	88		0.923564
603	88	11			0.923564
607		88	11		0.923564
658			87	12	0.992554
662	87		12		0.992554
664		87	12		0.992554
665	12			87	0.992554
668	12		87		0.992554
670	87	12			0.992554
672	12			87	0.992554
676	87		12		0.992554
678		12		87	0.992554
679	12	87			0.992554
681			12	87	0.992554
683		12		87	0.992554
684		87	12		0.992554
706			14	85	0.993533
707		85		14	0.993533
708	75	12	12		0.975346
709	87	12			0.992554
712		62	12	25	1.0
714		14	85		0.993533
716	14		14	71	0.984337
717		71	14	14	0.984337
718	71		28		1.0
719	14			85	0.993533
720		28		71	1.0
721	28			71	1.0
723	71	28			1.0
724		14	85		0.993533
725	28		71		1.0
726	14	85			0.993533
727			28	71	1.0
729	83			16	0.994512
730	83	16			0.994512
732		16		83	0.994512
733	83		16		0.994512
735	83	16			0.994512
736	83		16		0.994512
828	20		80		0.995493
829		20	80		0.995493
945	16	83			0.994512
946	16			83	0.994512
978	85		14		0.993533
1447		10		90	0.90298
2080		11		88	0.999937
2310	90			10	0.90298
2311	10			90	0.90298
2322		88	11		0.923564
2325		88	11		0.923564
2328			11	88	0.923564
2334	88		11		0.923564
2339	87	12			0.992554
2340	87		12		0.992554
2341	12			87	0.992554
2343			12	87	0.992554
2355			20	80	0.995493
2357			20	80	0.995493
2361	80		20		0.995493
2366			20	80	0.995493
2367		80	20		0.995493
2368	80			20	0.995493
2370	20	80			0.995493
2371		20	80		0.995493
2374		20	80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
928	940	TCA TCA TCA TCA T	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain