SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9294

Length: 2119 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9294
AATGTCAATAAGTGGTGTCAGCTATATGGAGAGACATTTTCTATTGGTATGGAACCCATCCAAGGCTGTATATTTCAGAGCCAGAGCTAATCAAGGAAGTTTTATCGAATAAATTTGGTTACTATGGAAAGGAGACACCCATGCCCTTTTGTTGGCTTTGTTAGGGCGGGGACTGATTTTTGTAGATCGATTGGGATGGGTGAAGCACAGGAGGATCGTGGGCCCTGTCTTCAACGTTGATAAACTTAAGCCAATGGTGAAGAAAATGGCTGCTTGCACTTCATCCATGCTCGAGAATTGGCAAGAGATGATGTCTCAGGCAGACTCTAATGGCAAAGAAATTGATGTTCACAGCGAGTTTAGAACATTAACAGCAGACATCATAGCCCATACTGCATTCAGTAGCAGTTACAATGAAGGCAAAGAAGTATTTGAATTGCAAAGAGAATTACAAGCGATGGTTGCTGAAGCTGAACGATCTGTCTACATCCCAGGAAGCCAGTAATTGCAATATAGTTATCTTTCATTTATAGAGTTTTGCATGTGATTGCAAATTCATTAGTACTTGTACTTCTGTTTATGTTTTTTAAATAGTCCATTGGGGCCTGTTGTTCTATGGGCTAATGCCATAATCCATTGCATAAAGGTTTATTGAGCGCTATAGATAGTTCATAGTGTTTCTAAAAAGGAATAATGTTTCAATTACTTATAATTAAAGATTAGGGACTTATATTAGTTGACCTTTGCAGATCTATTCCTACCAGAAGGAACAGGTATGCCTGGAAGATTGACAGAAGAATCAAAGAAATCCTGAATTCTATAATTCAGAGTAGGCTGGAGTCCAGAACAACATCAAGAACTCAGGTTGGTTACGGAAGTGACCTGCTCGGAATCATGATGACTGCCAACCAGAAAGAATTGGGTGGGTCCCAAAGAGATCTAAGCATGACTATTGATGAATCATGGATGAATGCAAGACATTTTTCTTTGCAGGCCACGAGACAACTTCCAATCTGCTGACTTGGGCAGTATTCTTGCTCTCGATAAACCCGGAATGGCAGGAAATATTAAGGAAAGAAGTTATTAATGTCTTGTGGTACAGATATACCAGATGCGGACATGCTTAGCAGGATGAAATCGATGACTATGGTGCTAAATGAAACTCTAAGGTTATATCCACCAGCTGCTAGGTTAATAAGAAAAGCATACAAAGCAATCAAGCTTGGCCAGTTCTCTCTTCCGAAAGATGCAGCCTTGTCAATTTCAATTTTGGCAATGCATCACAATGAAAAGTTTTGGGGTCCAGATGCAAACTTGTTTAAGCCAGAGAGATTTGCAGCGGGTGTTTCAAAGGCAGCAGTTCATCCAAATGCTTTCCTTCCATTTTCCTTGGGGCCAAGAAATTGCGTTGGCCAAAATTTTGCCATGTTAGAGGCCAAGAGTGTTCTGGCCATGATTTTACAGAGATTTTCATTCAGTCTCTCCCCTTCTTACAAGCATGCCCCAGCGGCTGTGCTTACTATACAGCCTCAGCATGGCATGCAAATCATATTCGAAAGTATTGACGTGTAAACAGAACGAGGAGTTTTTCCAAGTCTCTTGTGCGTCCATAACCTCCTTCATCTGACATAATGAGCCTGCAAATAATAATGTACTTATTTTACAATATTTGAGCATGTAGGGGTCTTAGTAAGTTTGGAAATTAGTTTTGATTTCTCTACTAATGGAAGATAACATTGATTTCTCTATTAATGTTATCTTCCTCATTATGTATAAACTAAGATGGAAGTATCGTAGCTCGGTGCGTATGGAAAGTAGGGGTTTCTGGAACAGAGTTGTGGATGTTTCTAACTTTTACACAGGTTCTGTTGTGTATTTGAATTTATGTTTTTGTTTCCTAGCTAAAACTCTACCCATTCCATCCTCCATTTGGAATCGAGGGCCAAATCACTTGAAATTGTGGCACTTGAAATTGATGCCTAATACTCTGGCAGCAGATTTATCAACTGGAAAAGAAAGGCCGAAATTCAGCCAGCGAAGTTATCTAGAGTCTATTCTCCTTGCATCCACGTAGACACGTCAAGACTTGCATGAGTACATTTGGGTTCTCTATCTCTTT

Ace file of the UniGene sp_v2.0_unigene9294

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9RN23_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	cytochrome p450	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	electron transport chain	GO:0022900	Biological Process	65%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	65%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	65%
Blast2go	heme binding	GO:0020037	Molecular Function	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ33

Fln msg: Overlapping hits, possible frame ERROR between 39 and 39, and possible frame ERROR between 146 and 176, your sequence is longer than subject: 543 - 460

Fln protein: NVNKWCQLYGETxxYWYGTHPRLYISEPELIKEVLSNKFGYYGKETPMxxxxxxxxxxxIFVDRLGWVKHRRIVGPVFNVDKLKPMVKKMAACTSSMLENWQEMMSQADSNGKEIDVHSEFRTLTADIIAHTAFSSSYNEGKEVFELQRELQAMVAEAERSVYIPGSQ*LQYSYLSFIEFCM*LQIH*YLYFCLCFLNSPLGPVVLWANAIIHCIKVY*AL*IVHSVSKKE*CFNYL*LKIRDLY*LTFADLFLPEGTGMPGRLTEESKKS*IL*FRVGWSPEQHQELRLVTEVTCSES**LPTRKNWVGPKEI*A*LLMNHG*MQDIFLCRPRDNFQSADLGSILALDKPGMAGNIKERSY*CLVVQIYQMRTCLAG*NR*LWC*MKL*GYIHQLLG**EKHTKQSSLASSLFRKMQPCQFQFWQCITMKSFGVQMQTCLSQRDLQRVFQRQQFIQMLSFHFPWGQEIALAKILPC*RPRVFWP*FYRDFHSVSPLLTSMPQRLCLLYSLSMACKSYSKVLTCKQNEEFFQVSCASITSFI*

Protein Length: 544

Fln nts: AATGTCAATAAGTGGTGTCAGCTATATGGAGAGACAxxxxxxTATTGGTATGGAACCCATCCAAGGCTGTATATTTCAGAGCCAGAGCTAATCAAGGAAGTTTTATCGAATAAATTTGGTTACTATGGAAAGGAGACACCCATGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATTTTTGTAGATCGATTGGGATGGGTGAAGCACAGGAGGATCGTGGGCCCTGTCTTCAACGTTGATAAACTTAAGCCAATGGTGAAGAAAATGGCTGCTTGCACTTCATCCATGCTCGAGAATTGGCAAGAGATGATGTCTCAGGCAGACTCTAATGGCAAAGAAATTGATGTTCACAGCGAGTTTAGAACATTAACAGCAGACATCATAGCCCATACTGCATTCAGTAGCAGTTACAATGAAGGCAAAGAAGTATTTGAATTGCAAAGAGAATTACAAGCGATGGTTGCTGAAGCTGAACGATCTGTCTACATCCCAGGAAGCCAGTAATTGCAATATAGTTATCTTTCATTTATAGAGTTTTGCATGTGATTGCAAATTCATTAGTACTTGTACTTCTGTTTATGTTTTTTAAATAGTCCATTGGGGCCTGTTGTTCTATGGGCTAATGCCATAATCCATTGCATAAAGGTTTATTGAGCGCTATAGATAGTTCATAGTGTTTCTAAAAAGGAATAATGTTTCAATTACTTATAATTAAAGATTAGGGACTTATATTAGTTGACCTTTGCAGATCTATTCCTACCAGAAGGAACAGGTATGCCTGGAAGATTGACAGAAGAATCAAAGAAATCCTGAATTCTATAATTCAGAGTAGGCTGGAGTCCAGAACAACATCAAGAACTCAGGTTGGTTACGGAAGTGACCTGCTCGGAATCATGATGACTGCCAACCAGAAAGAATTGGGTGGGTCCCAAAGAGATCTAAGCATGACTATTGATGAATCATGGATGAATGCAAGACATTTTTCTTTGCAGGCCACGAGACAACTTCCAATCTGCTGACTTGGGCAGTATTCTTGCTCTCGATAAACCCGGAATGGCAGGAAATATTAAGGAAAGAAGTTATTAATGTCTTGTGGTACAGATATACCAGATGCGGACATGCTTAGCAGGATGAAATCGATGACTATGGTGCTAAATGAAACTCTAAGGTTATATCCACCAGCTGCTAGGTTAATAAGAAAAGCATACAAAGCAATCAAGCTTGGCCAGTTCTCTCTTCCGAAAGATGCAGCCTTGTCAATTTCAATTTTGGCAATGCATCACAATGAAAAGTTTTGGGGTCCAGATGCAAACTTGTTTAAGCCAGAGAGATTTGCAGCGGGTGTTTCAAAGGCAGCAGTTCATCCAAATGCTTTCCTTCCATTTTCCTTGGGGCCAAGAAATTGCGTTGGCCAAAATTTTGCCATGTTAGAGGCCAAGAGTGTTCTGGCCATGATTTTACAGAGATTTTCATTCAGTCTCTCCCCTTCTTACAAGCATGCCCCAGCGGCTGTGCTTACTATACAGCCTCAGCATGGCATGCAAATCATATTCGAAAGTATTGACGTGTAAACAGAACGAGGAGTTTTTCCAAGTCTCTTGTGCGTCCATAACCTCCTTCATCTGA___CATAATGAGCCTGCAAATAATAATGTACTTATTTTACAATATTTGAGCATGTAGGGGTCTTAGTAAGTTTGGAAATTAGTTTTGATTTCTCTACTAATGGAAGATAACATTGATTTCTCTATTAATGTTATCTTCCTCATTATGTATAAACTAAGATGGAAGTATCGTAGCTCGGTGCGTATGGAAAGTAGGGGTTTCTGGAACAGAGTTGTGGATGTTTCTAACTTTTACACAGGTTCTGTTGTGTATTTGAATTTATGTTTTTGTTTCCTAGCTAAAACTCTACCCATTCCATCCTCCATTTGGAATCGAGGGCCAAATCACTTGAAATTGTGGCACTTGAAATTGATGCCTAATACTCTGGCAGCAGATTTATCAACTGGAAAAGAAAGGCCGAAATTCAGCCAGCGAAGTTATCTAGAGTCTATTCTCCTTGCATCCACGTAGACACGTCAAGACTTGCATGAGTACATTTGGGTTCTCTATCTCTTT

Fln Alignment:

Contig9294___NKWCQLYGETFFYWYGTHPRLYISEPELIKEVLSNKFGYYGKETPMPxxxxxxxxxxIFVDRLGWVKHRRIVGPVFNVDKLKPMVKKMAACTSSMLENWQEMMSQADSNGKEIDVHSEFRTLTADIIAHTAFSSSYNEGKEVFELQRELQAMVAEAERSVYIPGSQ
C0PQ33______________HKWCQIYGEPFFYWYGIHSRLYISEPELIKEVLSNKFGHYDKPTPRPxxxxxxxxxxVFADGLRWVKHRRIVSPVFNVDKLKPMVKKMAACTSSMLENWQEMMAQADSHGKEIDVHHDFRALTADIISHTAFGSSYNEGKEVFELQRQLQEMAAKAEQSVFIPGSQ

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
322	25		75		0.996473
324		75		25	0.996473
405	20		80		0.995493
406		20		80	0.995493
447	25		75		0.996473
458	25		75		0.996473
477	75			25	0.996473
480			75	25	0.996473
486			25	75	0.996473
505	33		66		0.997452
508	66			33	0.997452
512		33	66		0.997452
516	66	33			0.997452
517		33		66	0.997452
519			33	66	0.997452
521	33		66		0.997452
522			33	66	0.997452
523			33	66	0.997452
524	66		33		0.997452
525	33			66	0.997452
527	33			66	0.997452
528			33	66	0.997452
529			33	66	0.997452
530		66		33	0.997452
533			33	66	0.997452
534		33		66	0.997452
535	66			33	0.997452
537	66		33		0.997452
542	33			66	0.997452
545			33	66	0.997452
546	33		66		0.997452
549			33	66	0.997452
550	33		66		0.997452
551	33			66	0.997452
554	33			66	0.997452
1704	85		14		0.993533
1836	25			75	0.996473
1840			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain