SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9287

Length: 1795 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9287

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative quinolinate phosphirobosyltransferase [Nicotiana tabacum]	-	-	72%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	78%
Blast2go	nicotinate-nucleotide pyrophosphorylase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nicotinate-nucleotide diphosphorylase (carboxylating).	EC:2.4.2.19	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	NAD biosynthetic process	GO:0009435	Biological Process	84%
Blast2go	nicotinate-nucleotide diphosphorylase (carboxylating) activity	GO:0004514	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Nicotinate-nucleotide pyrophosphorylase	IPR004393	-	-
Sma3	Quinolinate phosphoribosyl transferase, C-terminal	IPR002638	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HJA3

Fln msg: your sequence is longer than subject: 370 - 329

Fln protein: MEVLRCMCWSNYSYNCSTIPRQLSVEAAPRPRVAHRYREISAVMSKPTLKTSRGYMTVPPPAHPTYDLKTIINLALAEDAGDKGDVSCLATIPVEREAEAHFLAKEDGVIAGIAMAIMVFEEVDPQLKVDWSQNDGDLVQRGLQFGSVYGSARSILVAERVALNFMQRMSGIATLTKAMADAARPARVLETRKTAPALRLVDKWAVLIGGGENHRMGLFDMVMLKDNHISVAGGITNAIESVEQYLEENNLQMAVEVETRTLEEVKEVLSYTGRGRSVVTRIMLDNMIVPLPNGDVDVSMLKEAVQLINDRFETEASGNVTLDTIGKIGATGVTFISSGALTHSVKALDISLKIDTELALAVGRRTNRA*

Protein Length: 371

Fln nts: GAGATTGACAACTACTCTCCGAAACGATATTGAGGGCACTCTAAGAAAACGAGAAATGTTTGCGTTTTTCATCGTAAAAACTCTGAAATCATATTCATAATTTCACTTCAATTGAGAGGGTGCACCGCGAAGCACATGGCTGATTGGACTTTGGATGCCTAAGTAATCCATATATTCATCTCCGCGTACTTCTCTCTGTCTGTATATCTGATCATATTTTCAAATAAGCAAATTTTC_-_ATGGAGGTTCTGCGGTGTATGTGCTGGAGCAATTATTCTTACAACTGTAGCACAATCCCCAGACAGTTATCTGTTGAAGCAGCGCCCAGACCAAGAGTCGCTCACAGGTATAGAGAAATTTCAGCAGTCATGAGTAAACCCACGTTAAAAACTTCACGTGGGTATATGACAGTGCCACCTCCTGCTCATCCAACTTATGACCTCAAGACCATTATTAATCTAGCATTAGCTGAAGATGCAGGTGACAAAGGGGATGTGTCTTGTTTGGCAACCATTCCAGTTGAAAGAGAAGCAGAAGCTCATTTTTTGGCAAAAGAAGATGGCGTGATTGCTGGAATTGCAATGGCAATCATGGTATTTGAGGAGGTAGATCCTCAGTTGAAGGTTGATTGGAGTCAGAATGATGGGGATCTTGTTCAGAGAGGTTTACAGTTTGGCTCGGTGTATGGCAGTGCCAGAAGCATTCTTGTGGCAGAAAGAGTTGCTCTCAACTTTATGCAACGAATGAGTGGAATTGCAACTCTTACAAAGGCAATGGCAGATGCTGCAAGGCCTGCACGTGTCTTAGAAACTCGGAAAACTGCCCCAGCTCTACGATTGGTGGACAAATGGGCGGTCCTGATAGGTGGTGGAGAGAATCATAGAATGGGCTTGTTTGACATGGTAATGCTGAAAGATAATCATATTTCTGTAGCTGGAGGAATCACTAATGCCATTGAATCTGTTGAGCAATACTTGGAGGAGAACAATCTTCAGATGGCTGTAGAGGTTGAAACAAGAACTTTAGAGGAAGTGAAGGAGGTTCTGTCATATACTGGTAGAGGTAGATCTGTGGTAACACGCATAATGTTAGACAACATGATTGTGCCACTCCCCAATGGTGATGTTGATGTGTCCATGCTGAAAGAAGCTGTTCAATTGATCAATGATCGATTTGAGACTGAGGCCTCAGGCAATGTTACCCTTGATACTATTGGAAAAATTGGAGCGACTGGAGTGACATTTATTTCCAGCGGGGCTTTGACACATTCTGTAAAGGCATTGGATATATCCCTTAAAATCGATACAGAGTTGGCCTTGGCAGTTGGAAGGCGAACAAATCGTGCATGA___ACTAGACGAAATATTCAATCCTTTTTTATAATTTTATCTGTCTTGTTTCAAGTTAAAGTCAAGCTAATTTTTACATCTTATGAATGATTTCCTAATTAAGATTTGCATTATGCTATTTCAATGTTGCTGGTAAGACAGTCCCAACAGGCCTTTTTGATGTTGAGTGACAAAAAGAAAAATCATAGCCTTTTTGATATTGAGTAACAAATGTCAAAAAGGCAAAGCATAATATGATGCTTACAGTCTGGACTTTGTATTGGTACATTCCTCATCTTTTTCCTTTTACGTATAAAGGAAAATATGCCAAAGAAACAAAAATGTATGCTTGTCACTGTTATCCTCCAATTTTGTTGGAGGGTATAAAAGTTCCGAATTTCTTTGTAGAATTGAAAAATGTGTGTTATCCTCCAATCTTGTTGAAGAGGAAATAAAAGTTACAAATTTCTTT

Fln Alignment:

Contig9287___MTVPPPAHPTYDLKTIINLALAEDAGDKGDVSCLATIPVEREAEAHFLAKEDGVIAGIAMAIMVFEEVDPQLKVDWSQNDGDLVQRGLQFGSVYGSARSILVAERVALNFMQRMSGIATLTKAMADAARPARVLETRKTAPALRLVDKWAVLIGGGENHRMGLFDMVMLKDNHISVAGGITNAIESVEQYLEENNLQMAVEVETRTLEEVKEVLSYTGRGRSVVTRIMLDNMIVPLPNGDVDVSMLKEAVQLINDRFETEASGNVTLDTIGKIGATGVTFISSGALTHSVKALDISLKIDTELALAVG
B9HJA3______________MVVKPPSHPTYDMKGVIKLALAEDAGDRGDVTCLATIPFDMEVEAHFLAKEDGIVAGISLAEMIFHEVDPSLKVEWSQKDGDYVQKGLQFGKVSGQAHNIVVAERVVLNFMQRMSGIATLTKTMADAARPACILETRKTAPGLRLVDKWAVLIGGGRNHRMGLFDMVMIKDNHISIAGGIINAIKSVDQYLEQQNLQMEVEVETRTLEEVDEVLRYTSQTKSSLTRIMLDNMVIPLPNGDVDVSMLKDAVEMINRRFETEASGNVTLETVHKIGQTGVTYISSGALTHSVKALDISLKIDTELALQVG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
118	83		16		0.994512
129		16		83	0.994512
150		50		50	1.0
162	50		50		1.0
185			70	30	1.0
201		50	50		1.0
289		87		12	0.992554
298		42		57	1.0
328	85			14	0.993533
329		85		14	0.993533
331	85		14		0.993533
332	85	14			0.993533
375	60		40		1.0
463	50	50			1.0
554	33			66	1.0
1002		25		75	0.996473
1208	16	83			0.994512
1279	50		50		1.0
1439	12			87	0.992554
1440		12	87		0.992554
1460		66		33	1.0
1495		85	14		0.993533
1565		18		81	0.999994
1577	80		20		0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain