SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9283

Length: 365 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene9283
ATGGGAGACAATACCAGCGGTTTGGATGATGGGTTGTGTAGCAAAAGCAGTTTTGGGTTAGAAGAGCATGTTATTCGTTGGGGGTATGCTTCCATTTGTGGCAGGAGGCGGGAAATGGAGGATGCCGTTACAGCACTGCCAGGATTTCTGTCTGTGGCGTCTGAAACTGTGGGGGACTTGGAAAGTTCTACTGGGAAAGCAGCCCTACATCTGTTTGGAGTTTATGATGGACATGGGGGCTCTCAGGTAGCAAATTTCTGCAAAGAGCGCCTCCATGGAGCTCTAATTGAGGAGTTGGAGGCAGAAATGAGAGAGGGTGACAGAGGTGAGGGTGAATGCAGCTGGCAGAGGCAATGGGAAAGGGC

Ace file of the UniGene sp_v2.0_unigene9283

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABI1 protein phosphatase 2C-like protein (Fragment) n=3 Tax=Pinus RepID=Q5FYN4_PINTA	-	-	3.0e-38	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	abi1 protein phosphatase 2c-like protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	73%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8K0

Fln msg: Distance to subject end: 213 aas, your sequence is shorter than subject: 121 - 533

Fln protein: MGDNTSGLDDGLCSKSSFGLEEHVIRWGYASICGRRREMEDAVTALPGFLSVASETVGDLESSTGKAALHLFGVYDGHGGSQVANFCKERLHGALIEELEAEMREGDRGEGECSWQRQWER

Protein Length: 122

Fln nts: ATGGGAGACAATACCAGCGGTTTGGATGATGGGTTGTGTAGCAAAAGCAGTTTTGGGTTAGAAGAGCATGTTATTCGTTGGGGGTATGCTTCCATTTGTGGCAGGAGGCGGGAAATGGAGGATGCCGTTACAGCACTGCCAGGATTTCTGTCTGTGGCGTCTGAAACTGTGGGGGACTTGGAAAGTTCTACTGGGAAAGCAGCCCTACATCTGTTTGGAGTTTATGATGGACATGGGGGCTCTCAGGTAGCAAATTTCTGCAAAGAGCGCCTCCATGGAGCTCTAATTGAGGAGTTGGAGGCAGAAATGAGAGAGGGTGACAGAGGTGAGGGTGAATGCAGCTGGCAGAGGCAATGGGAAAGGGC

Fln Alignment:

Contig9283___SICGRRREMEDAVTALPGFLSVA-SETVGDLESSTG------KAALHLFGVYDGHGGSQVANFCKERLHGALIEEL
D5A8K0______________SIIGRRREMEDAVSAVPSFFSIPKASSIALLDGFPGFVQPPLSTALHFFAVYDGHGGSQASVFCKDRFHEALAEEL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
191	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain