SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9270

Length: 971 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9270

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine-rich receptor-like protein kinase 6 [Arabidopsis thaliana] sp\|Q9C5S9.1\|CRK6_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 6; Short=Cysteine-rich RLK6; AltName: Full=Receptor-like protein kinase 5; Flags: Precursor gb\|AAK28316.1\|A	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	cysteine-rich receptor-like protein kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQB9

Fln msg: Separated hits, possible frame ERROR between 534 and 536, your sequence is shorter than subject: 269 - 290

Fln protein: YLPNKSLDTFLFNPGKSRVLDWQKRYNIIIGIARGLLYLHEDSQLRIIHRDIKVNNILLDDKLNPKIADFGLARLFPVDETHVQTRVAGTYGYMAPEYAMFGQLSVKSDVYSFGVVLLEIVSGRRHTDIRLPQEMQNLLEWGWRLCNGGNLLNMVDPTIVGCLEQEQALKCIRVALLxxVQSDVSNRPAMSDVVVMLSTNSVAIPNPTKPAFVSLSFSGDGHTKDGAVTTSSAPSQIQLSVSNLSGGPSSSTNSSEARQNNVGVFDNY*

Protein Length: 270

Fln nts: TACTTGCCCAATAAAAGCCTTGACACCTTCCTCTTCAACCCAGGAAAAAGCAGAGTTCTTGATTGGCAAAAACGCTATAACATCATAATCGGAATAGCACGCGGCCTCCTCTATCTTCATGAGGATTCACAACTGCGTATTATTCATCGAGATATTAAAGTAAACAACATTCTGCTGGACGACAAGCTGAATCCCAAGATAGCAGACTTTGGATTGGCCAGACTTTTTCCTGTTGATGAGACTCATGTTCAAACCAGAGTTGCTGGGACATACGGTTATATGGCTCCAGAGTATGCAATGTTTGGGCAACTATCTGTAAAATCAGATGTTTACAGTTTCGGTGTCGTTCTTCTCGAGATTGTAAGTGGGAGAAGACACACTGATATCCGCCTTCCTCAGGAAATGCAAAACCTTTTAGAATGGGGATGGAGATTGTGCAATGGAGGAAACCTGTTGAATATGGTCGACCCGACAATAGTTGGATGTTTGGAGCAGGAGCAAGCCTTGAAATGCATTCGTGTTGCCCTTCTATGxxxTGTCCAGTCTGATGTGTCAAATCGACCAGCAATGTCTGATGTTGTTGTGATGCTGTCAACCAATTCAGTGGCCATACCCAATCCGACGAAGCCTGCTTTTGTTAGTCTTAGCTTTAGCGGGGATGGACATACAAAAGATGGAGCTGTTACCACGTCATCTGCCCCCTCGCAAATCCAGCTGTCAGTCTCCAATTTGTCAGGAGGTCCTTCTTCGTCAACTAATAGTTCGGAAGCTAGACAGAACAATGTTGGAGTCTTCGACAATTATTAGTTTGGAAGATAGTGAGATTATTGTGTGGCCTAGTTTAATAGGGTACTAAAATGGAAATCTCTGTTTCGAGGAGTGGTGTTGATATTTTTAGGGGAATAATTTGAGAGTGAAACCTAGTATTTAATGTGATTAAGATTTTAATATATTTTGTAAATATTATTTAAAC

Fln Alignment:

Contig9270___YLPNKSLDTFLFNPGKSRVLDWQKRYNIIIGIARGLLYLHEDSQLRIIHRDIKVNNILLDDKLNPKIADFGLARLFPVDETHVQTRVAGTYGYMAPEYAMFGQLSVKSDVYSFGVVLLEIVSGRRHTDIRLPQEMQNLLEWGWRLCNGGNLLNMVDPTIVGCLEQEQALKCIRVALLCxVQSDVSNRPAMSDVVVMLSTNSVAIPNPTKPAFVSLSFSGDGHTKDGAVTTSSAPSQIQ
A9NQB9______________YLPNKSLDKLLFNPERRKVLDWQKRYNIIIGVARGLLYLHQDSQLRIIHRDVKVNNILLDDKLNPKIADFGLARLFPDDETHVHTRVAGTYGYMAPEYAMLGQLSVKADVYSFGVVLLEIVSGRRNTDIRLPQEQQILLEWGWRLCNGENLLNMIDPTIVGCCPQEQALRCIQVGLLCxVQADVVNRPAMSDVVLMLSANSMGIPNPTKPAFVSLSFSGDACTKDGAVSTSSATSQIQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
561	50	50			1.0
609		50	50		1.0
618		50		50	1.0
875			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain