SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9262

Length: 1794 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9262

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SB23_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at4g20940-like	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	69%
Blast2go	signal transduction	GO:0007165	Biological Process	69%
Blast2go	cellular metabolic process	GO:0044237	Biological Process	69%
Blast2go	binding	GO:0005488	Molecular Function	69%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Domain of unknown function DUF1204	IPR009596	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Distance to subject end: 410 aas, your sequence is shorter than subject: 465 - 914

Fln protein: MSLVSEEISRMKFVTLLTITTLALSVGFVTAQSLSKDALTLLEFKKGIQKDPFGYVLNSWNEKSVDLNGCPTSWHGIVCNNGMLTGIDLSNLNLSGEIQLGILSKLKMLQNINLSNNSLTGKLPAEWGTLQSIQHIDLSDNLFHGTVPVEIGSMRSAQNLSFAGNKLTGVIPDSIGGMSSRQNLDLTRNSFSGRMPSTLTNLQQLICLNLSSNTISGEFPAGLEKLPVLKSLDFHQNSLSGSIDPAFMLLTSAQYVDMSCNMLSGPLPWKMTVISSLTESLQYLNLSNNRFTGPLLSDDIIPLFDSLKVLDISSNYLTGQLPGFHFVYALEVLRLSNNQFSGFIPFTLLARDSSVLIELDLSRNNLSGPLGIITSTTLKILNVSSNSLSGTLPTITGSCTIMDLSNNKFSGNLSVMRSWGNAMEVIDLSGNQFTGSLPNETSQFLRLTYLNVSHNTLVGPLVSVL

Protein Length: 466

Fln nts: CATATAGTCCATTTCAGTTGCTAGGTATCGTGAAATTTTGGAATCAGGGTTTTATACCCAGTGTTTAGCCCGGATCCTTGCATGGAGCGTCTGGCTTGGACAATGTTCCAGTACATTGTGTGATTGTCTATTATAATGTTCTAGCCAGTTTACATGGAGACCTAGCTAGCATACCTTACACTATCTGCAGTAAACTGGCTAGGTTGCGTTGAAATCTTTAGTGAGTTGTTGTGGCCAGATTACTTTGATGTATGTGATGCACACTCCACGGTGCTGATTAGCATTTCCTTTAAGCATTCAGTGCATTATTTGGCAAAGATGAACGGAAGAGCTTCATTGGTTTGAATTCCCTAGTGCCGAAACGGGAAGCTCATTTTGCAGGGTTTTGGAAGTAAAG_-_ATGTCTTTGGTATCCGAGGAAATAAGTAGAATGAAGTTTGTTACACTGCTAACAATAACAACTCTTGCTCTGTCCGTTGGATTTGTTACCGCTCAATCGCTTTCTAAGGATGCATTGACACTTCTTGAATTCAAGAAAGGAATCCAGAAGGATCCTTTTGGTTATGTACTTAACTCGTGGAATGAAAAATCAGTGGATTTGAATGGTTGTCCAACATCTTGGCATGGAATTGTGTGCAACAATGGCATGCTCACTGGAATTGACCTCAGCAATCTGAATCTTTCTGGAGAGATTCAGCTCGGGATTTTAAGTAAGCTTAAAATGCTTCAAAATATAAATCTCTCTAATAATTCTCTTACAGGGAAGTTGCCTGCAGAGTGGGGAACATTACAGTCTATTCAGCATATTGATCTCTCAGACAATCTATTTCATGGGACCGTTCCAGTGGAAATTGGCAGTATGCGAAGTGCTCAGAATTTGTCATTTGCAGGTAACAAACTTACTGGAGTAATTCCTGATTCAATTGGTGGAATGAGCTCTCGTCAGAACCTAGACTTGACACGCAATTCTTTTTCTGGACGGATGCCAAGTACTTTGACAAATTTGCAACAGTTAATCTGTCTGAATTTGTCATCAAACACTATCAGTGGAGAATTTCCAGCAGGTTTGGAGAAGCTTCCAGTTTTAAAAAGCTTAGATTTTCATCAGAATAGTCTTTCTGGTTCTATTGATCCTGCCTTCATGCTTCTCACAAGTGCACAGTACGTTGATATGAGCTGCAACATGCTTTCCGGACCACTTCCTTGGAAAATGACAGTTATATCCAGCTTGACAGAGTCACTTCAATACTTGAATCTCAGCAACAATAGATTTACTGGACCACTGCTATCTGATGATATCATACCTTTGTTTGACAGCCTGAAGGTTCTGGATATAAGTAGTAATTACTTGACAGGACAACTTCCGGGCTTTCATTTTGTTTATGCCCTTGAGGTTTTGCGTTTGAGCAATAACCAATTTTCTGGCTTCATACCATTTACATTATTGGCACGAGATTCTTCAGTCTTGATTGAATTGGATCTCAGCCGCAATAATCTTTCAGGCCCACTTGGTATCATTACATCCACTACTCTCAAAATTCTTAATGTCTCGTCAAACTCACTCTCTGGCACATTGCCTACTATTACAGGAAGCTGCACAATTATGGATCTAAGCAATAACAAGTTTTCTGGAAACTTATCTGTAATGCGCTCTTGGGGGAATGCTATGGAAGTTATCGATTTGAGCGGTAATCAGTTTACAGGATCATTACCAAATGAGACGTCTCAATTTCTCAGACTTACATATCTAAATGTCTCACACAATACCTTAGTGGGTCCTCTTGTGTCAGTGCTTGG

Fln Alignment:

Contig9262___KDALTLLEFKKGIQKDPFGYVLNSWNEKSVDLNGCPTSWHGIVC--NNGMLTGIDLSNLNLSGEIQLGILSK----LKMLQNINLSNNSLTGKLPAEWGTLQSIQHIDLSDN-LFHGTVPVEIGSMRSAQNLSFAGNKLTGVIPDSIGGMSSRQNLDLTRNSFSGRMPSTLTNLQQLICLNLSSN-TISGEFPAGLEKLPVLKSLDFHQNSLSGSIDPAFMLLTSAQYVDMSCNMLSGPLPWKMTVISSLTESLQYLNLSNNRFTGPLLSDDIIPLFDSLKVLDISSNYLTGQLP-GFHFVYALEVLRLSNNQFSGFIPFTLLARDSSVLIELDLSRNNLSG--PLGIITSTTLKILNVSSNSLSGTLPTI---------------TGSCTIMDLSNNKFSG-NLSVMRSWGNAMEVIDLSGNQFTGSLPNETSQFLRLTYLNVSHNTLVGPL
B8LLA8______________RDLNALLAFKKAITNDSSG-LLYDWTAQNSH-NIC--SWYGVRCRPHSTRVVQIDLSYSGFDSGLE-GILSSSLGSLSLLKTMNLSGNNFTGGIPPEFGRLKALRILDLSGNWMLGGSVPKALLNCTHLKWIGLAKMDLTGTIPTEFGRLVELELLDLSWNALGGSIPTSLGNCTSLSHLDLSFNFRLSGHIPPTLGNCTSLSHLDLSKNSLSSHIPPTLGNCTSLSHLDLSENSLSSKIPPTL----GKCISLSYIGLYRNSLSGHM--PRTLGNLTQISQIDLSYNNLSGAIPVDLGSLQKLEDLDLSYNALDNIIPPSL--GNCSSLLSLSFSSNRLSGSIPHQLGNLRNIRTLYISNNNISGLLPSSIFNLPLFYYFYFNYNTLMYSSVDFRYNTLSGISGSISKANMSHVKYLDLTTNMFT-SIPEGIKNLSKLTYLSFTDNYLIGTI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
171	71		28		1.0
175		71	28		1.0
177			28	71	1.0
186			28	71	1.0
189	71			28	1.0
194	71	28			1.0
195	71			28	1.0
197	28			71	1.0
244	14	85			0.993533
332	40		60		1.0
1272		40		60	1.0
1438	75			25	0.996473
1440	75		25		0.996473
1441		25		75	0.996473
1508			25	75	0.996473
1510		33	66		0.997452
1511			66	33	0.997452
1512			33	66	0.997452
1514		33		66	0.997452
1516	66			33	0.997452
1518			33	66	0.997452
1519	66		33		0.997452
1521	66			33	0.997452
1522			33	66	0.997452
1523		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain