SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9255

Length: 1561 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene9255

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2 domain-containing protein / XYPPX domain-containing protein [Musa acuminata]	-	-	3.0e-24	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	src2-like protein	-	-	0.0	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	0.0	58%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	XYPPX repeat	IPR006031	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNV6

Fln msg:

Fln protein: MEVRGMELTLISARELKKATVVSKTKAYAVAWISNDHKNRQRTLVDKNNGNDPNWNHAMKFTLDEAALQQGRLLLEIVVYADATFRDKEIGRITMSLNEFLNPGTTSAQFVSYQIRKSSGEPKGLLNLSVKLAEKAEVKQQQHPQAVAGSYGAAKGEPAIAYPASSFVAAKAEPVTAYPFYPPAGSSSHPPPNNHYPAPPAGYPPPPPYYQGYSPSPYQGYPANQGYTPHSSYPPVVPAAQQPARKNNKLGMGLGAGLIGGALGGLLLGDIISDASYDAGFDDGYNGDGGDFGGDL*

Protein Length: 298

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATCTAATATCCATTCCGCTGTTCCCAAATTCAGTCTTGTTCTTCCCCAATTTCAATCTGTAAATTCAGATTCTTCCCCAATTTCACTCTCTAAATTCATTTTTCCTTTGTATTGAATTCATCGAGGTGCC_-_ATGGAGGTACGGGGCATGGAACTAACCCTTATCTCGGCCCGCGAACTGAAGAAGGCCACCGTGGTCTCCAAAACAAAGGCCTACGCAGTCGCATGGATCTCCAACGATCACAAAAACAGGCAACGCACGCTCGTGGACAAGAACAACGGCAACGATCCCAACTGGAACCACGCTATGAAGTTCACCCTCGACGAAGCCGCTTTACAGCAGGGCCGCCTGCTTCTCGAGATCGTAGTCTACGCCGACGCAACCTTCCGCGACAAAGAGATCGGCCGCATTACCATGTCCTTGAACGAATTTCTCAACCCTGGCACCACTTCGGCGCAGTTCGTCAGCTACCAGATCCGAAAATCCTCGGGAGAACCCAAGGGGCTTCTCAACCTCTCTGTGAAATTGGCCGAAAAGGCGGAGGTCAAGCAGCAACAGCACCCGCAGGCAGTCGCAGGGTCATATGGTGCGGCCAAGGGGGAGCCCGCGATCGCCTATCCAGCAAGTTCATTTGTGGCGGCAAAGGCGGAGCCAGTGACCGCTTACCCATTCTACCCACCGGCCGGCTCCTCGTCGCATCCGCCACCGAATAACCACTACCCTGCACCCCCGGCCGGCTATCCCCCGCCACCGCCTTACTACCAGGGTTACTCTCCGTCTCCCTATCAGGGTTACCCTGCTAACCAGGGCTACACACCCCACTCGAGTTATCCGCCCGTTGTCCCTGCGGCGCAGCAGCCGGCCAGGAAGAATAATAAACTGGGGATGGGTTTAGGGGCAGGCTTAATTGGCGGTGCTCTCGGCGGCCTGTTACTTGGAGATATTATCAGCGATGCTAGTTACGATGCAGGGTTTGATGATGGTTACAATGGTGATGGTGGTGACTTTGGCGGCGATTTGTAA___CCGGTCGGTTTTCGAAATCCGGTGCCAGAGATTTGGCAGGCCGCTCTAATGACAGAATCTGTATATGGTATGGTGGATTTGGCTTGGATTATTACAGATAAAATGGCGTTTCTTTGGTTTTATTGCACTTCTCCCCAAGTCCTCACACCCTGTCTCTTTCTCAGATTTTCGGTCGATTTCTCTTTGTAATAATACATATAAGTTTATCTCTAAAGTTATTGCAGACAGGATTAAGGAAGCAGTATCAAATTATATCTGGCCGAAGCAATTCGGCTTCCTATCAGGCCATCAGATTCATGACGTGGTGGCCACGACACATGAATGCCTATATTCATTCCAAGGAGGAGGAGGTTATAATTATGAAACTGGATTTACATATGGCATATCACTGTATTGATTTGTCATATTTGTGCATAATCCTCTTAAAAATTGGATTATTAATTGATAATATCACTTATGGAATGTGTGTTTTCAATCAATTTTGCGGTGTTAATAATTGGATATACATCGAAC

Fln Alignment:

Contig9255___MEVRGMELTLISARELKKATVVSKTKAYAVAWISNDHKNRQRTLVDKNNGNDPNWNHAMKFTLDEAALQQGRLLLEIVVYADATFRDKEIGRITMSLNEFLNP------GTTSAQFVSYQIRKSSGEPKGLLNLSVKLAEKAEVKQQQHPQAVAGSYGAAKGEPAIAYPASSFVAAKAEPVTAYP
B8LNV6______________MESRSMEITLISARDLNNTNILSKTKAYAVAWISNDHRNRQRTPLDKDHGTDPTWNQVMKFNLDEAALQQGRLVLEIAIYADATFGDKEIGHVSIPLNEFLKPAGGNKGATTSAQFVSYQVRKPSGKAKGTINLSVKLAEKPEVK----PQAVAGSYGAGKAEPVTAYPAASYGASNAEPVTAYP

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
680	75			25	1.0
751		71	28		1.0
761		80	20		0.995493
804		40		60	1.0
812		40		60	1.0
840	60	40			1.0
843		80		20	0.995493
846		60		40	1.0
848		80		20	0.995493
849		40		60	1.0
869		50		50	1.0
874		83		16	0.994512
890		50		50	1.0
907			16	83	0.994512
908			50	50	1.0
911	50		50		1.0
912	83	16			0.994512
914			83	16	0.994512
917		16		83	0.994512
919			16	83	0.994512
920	83			16	0.994512
921		16	83		0.994512
922	16		83		0.994512
923		50	50		1.0
924			83	16	0.994512
926	50		50		1.0
941	50			50	1.0
944	50			50	1.0
956	50		50		1.0
969	50		50		1.0
974		50		50	1.0
983			50	50	1.0
1012	50		50		1.0
1025		50		50	1.0
1043		50		50	1.0
1046		42	57		1.0
1055		57		42	1.0
1056	42		57		1.0
1069		66		33	1.0
1096	33			66	1.0
1106	66			33	1.0
1108	11	88			0.923564
1164			10	90	0.90298
1166		10	90		0.90298
1168			10	90	0.90298
1170		10		90	0.90298
1172		10		90	0.90298
1182		90		10	0.90298
1308		12	87		0.999964
1485	33			66	1.0
1504			20	80	0.995493
1510	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1388	1399	AGG AGG AGG AGG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain