SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9240

Length: 3137 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene9240
ATGGGGATTCTCGGAGCGTCTTGTTTTTTCAAAACCCTATCGCACATCATGGCCTGGGTTGGCAGTGCTACTCAGACGCTCCCACTAATGCTTTCGCAGACCAGAAGGATAAACACAACATCACCGTGAATGCCACACATTTTTCCCATTTTTAAGGATTTCTTGTGCTCTTTTACGATGAATATATACATTGAATATACAACCGGCCGTCCACTCAACCGTGGTCCCATGAGGTTTAAATTGTGAGTATACTGGCTAGATCCGGAAGCCTTAAAGGATTTATTAGGAAAGTCGGAATATAGCTCTGGATCTGCTCTGTCTTTTTCCAATTCTTTTATAAATAATTTGCGTGAGTTACAACATGGCGTTAGTTCTAAATTTTTGGTAAAACATCCCCTAGATCGTGACGTCCAACCGCATTTATAGTTACAGACGGGGAATGATATGAGAAATCTGGCTAAATACAGATAATGGCGTGATTAAACGCATTTGAGGGTTTTCATGTAATGAAGTGAAGCTGCATTTGGAGTTTCTGGCTTAGTGAGGGCAATGGCGTCAGTGCGGACTAGAGGAACTGAGAATGGATCAGAGAATTTACAGGGCAAGAACAGGCCTGGACCGTGGCCACCGAGAATGGAACCCTTACCCCATGATACAAATCACAACCCTAAAGTGTTGAAGACTTGGGCTAAGAGGACCGGATTTAGAAGTAATCTCTCTGGCGAGACTGTTAGCACCTCTGGCGATTTCGAGATAAGTAATGTGGATGCAGGGACCAGCGGCGCTGTGCCCAAGCCACCGCCTCCTCCTCCGGCGCCTTCGGCTCGTCGAGTGGTGGATCTGGAAACAGGAGCTGTGAATGCTAATGGGGGTATTAAGGAAATTGAGAAGGCGAGAGCTGCACCGGCCAGTGGCGGAGAATGGGAGTGCTGCGAATGCTAGCCCAGTTGTTCCATTCCCCCCTGCTTCGGTTCCCAGAGTTAAGAAAGGAGCTGATCCGGATCCTGTGAAGGCTACGACAACCTCTCGACATGAGGTTCCTAAAGTGCAGAGAGAAACAGAGATTGATGTCATGTCGCAGTCGCAAGATGCTGATGATGCTATGCTGGCCAGGCAGTCACATATGAAATACGAGCTAAGGGAAACCCCTGGACTTGTTCCAATTTTCCTATATGGGATTCAGCATTACTTGTCAATCGCTGGTTCACTTGTTCTTATACCGTTAGTTATTGTACCAGCAATGGGTGGGAGTGATGATGACACTTCCAGGGTGATATCTACTGTGCTTATGGTATCCGGAGTAACAACACTGTTGCATTCATATTTTGGTTCAAGGTTACCATTAGTCCAGGGTGGTTCCTTTGTTTACCTGGCTCCTGCTCTGGCTATCATTAACTCTTCGGAATTTCAAGGTCTCAATGAACATAGATTCAAGCACATCATGAAGGAATTACAGGGAGCGATAATTATAGGTTCCACTTTCCAGATGATCTTGGGCTATAGTGGTCTAATGTCACTTTTTCTCAGGTTGATAAACCCCGTTGTTGTTGCACCAACTGTAGCAGCAGTAGGTTTAGCATTTTTCAGCTATGGTTTTCCTCAAGTTGGTACTTGTGTGGAAATTAGCATCCCCCAGCTTTTGCTAGTCATCCTTTTTGCTTTGTATCTACGCAAGATTTCCATTTTTGGCCATCGGATATTTCAAGTTTATGCGGTTCCACTGGGCCTTGGGATCACTTGGGCATATGCTTTTCTTCTAACAGAGGCTGGAGCTTATAATTACAAAGGGTGTGATCCAAGTGTACCCATTTCAAATATTGTGTCAGAGGCTTGCAGGAAGCATGTATTTACAATGAACCACTGTCGTACAGATGCTTCAAAAGCATGGAGAACAGCGTCGTGGGTTCGAGTTCCATATCCTTTTCAGTGGGGCACTCCAACCTTCCATTGGAGGACAGCAATTGTAATGTGTGCTGTGTCTGTAATTGCATCTGTGGATTCGGTTGGTTCATATCATGCAACATCGCTTTTAGTCGCATCGAAGGCACCACCACCTGGGGTTGTGAGTAGAGGAATTGGTTTGGAAGGCTTGACAAGCATCTTGGCAGGACTTTGGGGTATGGGCACAGGTGCAACAACTCTCACTGAAAATGTCCATACCATTGCTGTTACAAAGATGGGAAGTAGAAGGGCTGTGGAACTTGGTGCTGGATTGTTAATCCTCATTTCACTTGTTGGCAAAGTGGGAGCCATTTTAGCTTCGATTCCACCAGCCATGGTTGCTGCTCTTCTATGTTTTATGTGGGCTATGCTTGCGGCATTGGGTTTATCAAATTTACGATACAGTGAAACTGGGAGCTCAAGGAATGTTATCATTGTAGGTCTCTCTCTTTTCCTTTCGCTATCAATACCTGCCTACTTCCAACAATATGGAGTTTCACCAAATGCAAACACTCCTGTACCAAGCTATTATCTGCCCTACATAGTGGCTTCACATGGACCCTTCCGTAGCAGTAACGGTGGACTGAATTATGTATTAAACACTCTATTCTCACTTCACATGGTGATTGCATTCCTGGTGGCTTTTATCCTAGACAATACTGTTCCGGGCAGTAGGCAAGAACGGGGGGTTTATATATGGTGCCGGTCAAAAGGTGGAAGGAGTGAACCTGCCATTGTGAAGGATTACGGAATGCCTTTGAGGCTTGGAAGATTTTTTAACTGGATGAAATGGGTAGGCATATGAGTTTATTTTAAAGGGAATTCTTTTTAAAAGTAAACGTGGCAGCTGTCCCAAGAAATAGTTTGTTGTAATGCAGAACAGCATTGTATTAATATTGAATTTCTACAAGCTATTGAGCCTGTTTCATATAATAGGTGTGCAAGTGTGGGAGCAGCTGTTGTAATTTTTAGTCTCTAGAGAGACTCAGGGAGAGAATTTTCACGTTTTAGCAAATAGTATCTGAGCAAGTCATCTCATCTGTAAATTACATTTGTTTTTTCGTGAATTTCTCTCTATGCATATTGTAAACGATGGAAAATATCTCCTGAATTCACATTCTTATACTGTATCTGGGATTTGTATTTTTGCATCTATGGGCGGCCATAGCGAGAGAATTGAGTGTCTAATTTCTGTC

Ace file of the UniGene sp_v2.0_unigene9240 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleobase-ascorbate transporter 12 [Arabidopsis thaliana] sp\|Q3E7D0.3\|NAT12_ARATH RecName: Full=Nucleobase-ascorbate transporter 12; Short=AtNAT12 gb\|AAM20397.1\| putative membrane transporter [Arabidopsis thaliana] gb\|AAN72132.1\| putative membrane transp	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	nucleobase ascorbate transporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	0.0	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: your sequence is longer than subject: 629 - 524

Fln protein: MLMGVLRKLRRRELHRPVAENGSAANASPVVPFPPASVPRVKKGADPDPVKATTTSRHEVPKVQRETEIDVMSQSQDADDAMLARQSHMKYELRETPGLVPIFLYGIQHYLSIAGSLVLIPLVIVPAMGGSDDDTSRVISTVLMVSGVTTLLHSYFGSRLPLVQGGSFVYLAPALAIINSSEFQGLNEHRFKHIMKELQGAIIIGSTFQMILGYSGLMSLFLRLINPVVVAPTVAAVGLAFFSYGFPQVGTCVEISIPQLLLVILFALYLRKISIFGHRIFQVYAVPLGLGITWAYAFLLTEAGAYNYKGCDPSVPISNIVSEACRKHVFTMNHCRTDASKAWRTASWVRVPYPFQWGTPTFHWRTAIVMCAVSVIASVDSVGSYHATSLLVASKAPPPGVVSRGIGLEGLTSILAGLWGMGTGATTLTENVHTIAVTKMGSRRAVELGAGLLILISLVGKVGAILASIPPAMVAALLCFMWAMLAALGLSNLRYSETGSSRNVIIVGLSLFLSLSIPAYFQQYGVSPNANTPVPSYYLPYIVASHGPFRSSNGGLNYVLNTLFSLHMVIAFLVAFILDNTVPGSRQERGVYIWCRSKGGRSEPAIVKDYGMPLRLGRFFNWMKWVGI*

Protein Length: 630

Fln nts: ATGGGGATTCTCGGAGCGTCTTGTTTTTTCAAAACCCTATCGCACATCATGGCCTGGGTTGGCAGTGCTACTCAGACGCTCCCACTAATGCTTTCGCAGACCAGAAGGATAAACACAACATCACCGTGAATGCCACACATTTTTCCCATTTTTAAGGATTTCTTGTGCTCTTTTACGATGAATATATACATTGAATATACAACCGGCCGTCCACTCAACCGTGGTCCCATGAGGTTTAAATTGTGAGTATACTGGCTAGATCCGGAAGCCTTAAAGGATTTATTAGGAAAGTCGGAATATAGCTCTGGATCTGCTCTGTCTTTTTCCAATTCTTTTATAAATAATTTGCGTGAGTTACAACATGGCGTTAGTTCTAAATTTTTGGTAAAACATCCCCTAGATCGTGACGTCCAACCGCATTTATAGTTACAGACGGGGAATGATATGAGAAATCTGGCTAAATACAGATAATGGCGTGATTAAACGCATTTGAGGGTTTTCATGTAATGAAGTGAAGCTGCATTTGGAGTTTCTGGCTTAGTGAGGGCAATGGCGTCAGTGCGGACTAGAGGAACTGAGAATGGATCAGAGAATTTACAGGGCAAGAACAGGCCTGGACCGTGGCCACCGAGAATGGAACCCTTACCCCATGATACAAATCACAACCCTAAAGTGTTGAAGACTTGGGCTAAGAGGACCGGATTTAGAAGTAATCTCTCTGGCGAGACTGTTAGCACCTCTGGCGATTTCGAGATAAGTAATGTGGATGCAGGGACCAGCGGCGCTGTGCCCAAGCCACCGCCTCCTCCTCCGGCGCCTTCGGCTCGTCGAGTGGTGGATCTGGAAACAGGAGCTGTGA_-_ATGCTAATGGGGGTATTAAGGAAATTGAGAAGGCGAGAGCTGCACCGGCCAGTGGCGGAGAATGGGAGTGCTGCGAATGCTAGCCCAGTTGTTCCATTCCCCCCTGCTTCGGTTCCCAGAGTTAAGAAAGGAGCTGATCCGGATCCTGTGAAGGCTACGACAACCTCTCGACATGAGGTTCCTAAAGTGCAGAGAGAAACAGAGATTGATGTCATGTCGCAGTCGCAAGATGCTGATGATGCTATGCTGGCCAGGCAGTCACATATGAAATACGAGCTAAGGGAAACCCCTGGACTTGTTCCAATTTTCCTATATGGGATTCAGCATTACTTGTCAATCGCTGGTTCACTTGTTCTTATACCGTTAGTTATTGTACCAGCAATGGGTGGGAGTGATGATGACACTTCCAGGGTGATATCTACTGTGCTTATGGTATCCGGAGTAACAACACTGTTGCATTCATATTTTGGTTCAAGGTTACCATTAGTCCAGGGTGGTTCCTTTGTTTACCTGGCTCCTGCTCTGGCTATCATTAACTCTTCGGAATTTCAAGGTCTCAATGAACATAGATTCAAGCACATCATGAAGGAATTACAGGGAGCGATAATTATAGGTTCCACTTTCCAGATGATCTTGGGCTATAGTGGTCTAATGTCACTTTTTCTCAGGTTGATAAACCCCGTTGTTGTTGCACCAACTGTAGCAGCAGTAGGTTTAGCATTTTTCAGCTATGGTTTTCCTCAAGTTGGTACTTGTGTGGAAATTAGCATCCCCCAGCTTTTGCTAGTCATCCTTTTTGCTTTGTATCTACGCAAGATTTCCATTTTTGGCCATCGGATATTTCAAGTTTATGCGGTTCCACTGGGCCTTGGGATCACTTGGGCATATGCTTTTCTTCTAACAGAGGCTGGAGCTTATAATTACAAAGGGTGTGATCCAAGTGTACCCATTTCAAATATTGTGTCAGAGGCTTGCAGGAAGCATGTATTTACAATGAACCACTGTCGTACAGATGCTTCAAAAGCATGGAGAACAGCGTCGTGGGTTCGAGTTCCATATCCTTTTCAGTGGGGCACTCCAACCTTCCATTGGAGGACAGCAATTGTAATGTGTGCTGTGTCTGTAATTGCATCTGTGGATTCGGTTGGTTCATATCATGCAACATCGCTTTTAGTCGCATCGAAGGCACCACCACCTGGGGTTGTGAGTAGAGGAATTGGTTTGGAAGGCTTGACAAGCATCTTGGCAGGACTTTGGGGTATGGGCACAGGTGCAACAACTCTCACTGAAAATGTCCATACCATTGCTGTTACAAAGATGGGAAGTAGAAGGGCTGTGGAACTTGGTGCTGGATTGTTAATCCTCATTTCACTTGTTGGCAAAGTGGGAGCCATTTTAGCTTCGATTCCACCAGCCATGGTTGCTGCTCTTCTATGTTTTATGTGGGCTATGCTTGCGGCATTGGGTTTATCAAATTTACGATACAGTGAAACTGGGAGCTCAAGGAATGTTATCATTGTAGGTCTCTCTCTTTTCCTTTCGCTATCAATACCTGCCTACTTCCAACAATATGGAGTTTCACCAAATGCAAACACTCCTGTACCAAGCTATTATCTGCCCTACATAGTGGCTTCACATGGACCCTTCCGTAGCAGTAACGGTGGACTGAATTATGTATTAAACACTCTATTCTCACTTCACATGGTGATTGCATTCCTGGTGGCTTTTATCCTAGACAATACTGTTCCGGGCAGTAGGCAAGAACGGGGGGTTTATATATGGTGCCGGTCAAAAGGTGGAAGGAGTGAACCTGCCATTGTGAAGGATTACGGAATGCCTTTGAGGCTTGGAAGATTTTTTAACTGGATGAAATGGGTAGGCATATGA___GTTTATTTTAAAGGGAATTCTTTTTAAAAGTAAACGTGGCAGCTGTCCCAAGAAATAGTTTGTTGTAATGCAGAACAGCATTGTATTAATATTGAATTTCTACAAGCTATTGAGCCTGTTTCATATAATAGGTGTGCAAGTGTGGGAGCAGCTGTTGTAATTTTTAGTCTCTAGAGAGACTCAGGGAGAGAATTTTCACGTTTTAGCAAATAGTATCTGAGCAAGTCATCTCATCTGTAAATTACATTTGTTTTTTCGTGAATTTCTCTCTATGCATATTGTAAACGATGGAAAATATCTCCTGAATTCACATTCTTATACTGTATCTGGGATTTGTATTTTTGCATCTATGGGCGGCCATAGCGAGAGAATTGAGTGTCTAATTTCTGTC

Fln Alignment:

Contig9240___MKYELRETPGLVPIFLYGIQHYLSIAGSLVLIPLVIVPAMGGSDDDTSRVISTVLMVSGVTTLLHSYFGSRLPLVQGGSFVYLAPALAIINSSEFQGL--NEHRFKHIMKELQGAIIIGSTFQMILGYSGLMSLFLRLINXXXXXXXXXXVGLAFFSYGFPQVGTCVEISIPQLLLVILFALYLRKISIFGHRIFQVYAVPLGLGITWAYAFLLTEAGAYNYKGCDPSVPISNIVSEACRKHV--FTMNHCRTDASKAWRTASWVRVPYPFQWGTPTFHWRTAIVMCAVSVIASVDSVGSYHATSLLVASKAPPPGVVSRGIGLEGLTSILAGLWGMGTGATTLTENVHTIAVTKMGSRRAVELGAGLLILISLVGKVGAILASIPPAMVAALLCFMWAMLAALGLSNLRYSETGSSRNVIIVGLSLFLSLSIPAYFQQYGVSPNANTPVPSYYLPYIVASHGPFRSSNGGLNYVLNTLFSLHMVIAFLVAFILDNT--VPGSRQERGVYIWCRSKGGRSEPAIVKDYGMPLRLGRFF
B8LQ21______________LEYCIDSNPPWPETIILGFQHYILMLGTTVMVPTFLVPAMGGNDHDKVRVIQTLLFVAGINTLLQSLFGTRLPTVVGGSFAFIIPITSIINDSSLRSIPDDHQRFLHTMRAIQGALIASSSLQIILGYSQLWGIFSRFFSPLGMTPVIALVGLGLFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAY--------------------KHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVAAVGISFIQFTNMNSMRNLFILGVSLFLGLSIPQYFNEF----------------YATSRVGPVHTNAGWFDDFLNTIFSSPPTVALIIAVFLDNTLEVEHSKKDRGMPWWVKFRTFRGDSRNEEFYTLPFNLNKFF

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
761	88		11		0.999937
763		11		88	0.999937
854	83		16		0.994512
877	83			16	0.994512
949		11		88	0.923564
1017	90			10	0.90298
1029		90		10	0.90298
1030		88	11		0.923564
1031	11			88	0.923564
1034		88		11	0.923564
1035	88		11		0.923564
1037		11	88		0.923564
1039			11	88	0.923564
1040		11	88		0.923564
1042	11			88	0.923564
1043	11			88	0.923564
1048	88	11			0.923564
1050	11	88			0.923564
1052			11	88	0.923564
1097		90		10	0.90298
1103	20		80		0.999996
1477	71			28	1.0
1479			85	14	0.993533
1483	83			16	0.994512
1484	83			16	0.994512
1485	83			16	0.994512
1486			83	16	0.994512
1487	14		71	14	0.984337
1489			14	85	0.993533
1490			85	14	0.993533
1491	85			14	0.993533
1493	14			85	0.993533
1495			85	14	0.993533
1502	14	85			0.993533
1503	14			85	0.993533
1504		14	85		0.993533
1506	14		85		0.993533
1507			85	14	0.993533
1508			85	14	0.993533
1511	12		87		0.992554
1553		14	85		0.993533
1554	85	14			0.993533
1555	85	14			0.993533
1557	85			14	0.993533
1751	83	16			0.994512
1870		33		66	0.997452
1871	33		66		0.997452
1872			66	33	0.997452
2359		20	80		0.995493
2639		20	80		0.995493
2640	60	40			1.0
2641	60	20	20		0.99255
2642	80	20			0.995493
2644		80		20	0.995493
2815	66		33		0.997452
3002	33			66	0.997452
3003	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain