SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene9228

Length: 2737 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene9228
CGGAAAAATCATATTTGTATCACTACAATTGTTTTCAATGTATTTTACGAAGTTGTATCTATCCTATCCATTTTCACATTCCACCTGTCGGATAAAAGGTCCACCCTATCCTGTAGCTTCTAAAAACACATGTGATTCCATTTCAGATTATTCTTCACCGTCTAACCTACCCTACGCTACAATTTCTTATAATGACTTGCGGAAAATAGGCCATTGACAGTGAATTGTGAGGAAATAAACCCCCAACTTCATGTTATCTGTCAAAAAAATTGCAAGCAATAGATGTTACAATTTTATATTGACAAAGTGCGTAGTGTTCAGCGCGTGACTCTGGCATGCGATTATATTTTCTATTGTTTCTTCTCCCACTGACCCACTTCCATCCCCACCGGCTTAGGGGTTAGCCATTCAATGTTCTTACCACTCTTTTGGCTTATACTCTTATAAAAGCCTCATTGGTGTCAGATTGCAAGCCCAAGATTTAGACGTGATTTTCTGTGCCTATATGATGTTTCTAGTTCATCTGGTTTGATCAATCATATCCCTGTCCTTGAGTCTAGAGTCCCTTCAACGCGGCAATAGTTATTTCATCAACCCTAGAGATTTTACAGAAAGGTCAGAAATGATGGGCAACTATATTTTTTTGGGTTTGACGTTAATCCTGCTTCACTTCCTCCATGGAGATAGTTTGAAGATGGGGATGAAAATGATCCACCGCCATTCCATACATAGCCCTCTTTACAGGAACTTCCCAAGCAAGCACCAGGCCATACAAGCGCTCATTAGCGTCGACTCCTCCAGAATAAGTTCCCATCATGTGCAATCCATGGCTCCTGCTTCGCCTCCGGTGGGCTCGAACGTCGGACCTAAGACAGAATTTGAAATGCCAATAGCCTCTGCTGCAACTCTGGGAACGGCGCTTTACTTCGTCGAGCTCTATGTTGGTTCTCCTCCTCAGAAAATCCTGCCTATAGCGGACACAGGTAGCAATCTCGTGTGGGTGAACTGCAATCCCTGCCAGAATTGCAGTTTTTTCGATCCCAACAGATCCTCGTCTTTATCATATGTCCCTTGTTACTCCAAAGAATGCTACGCTCTCTCTTCCACATTATCATGCATTTTTAGGCCCAAAATGGCCTGCAAATACAGCTATGGATACTTGGACAACTCTTCCACAACAGGTGCATATATACATGAAACGATTACGTTGAATTCTACATCTGGGAAGTCATTGAAGGCAGACAAAGTGTTGATGGGATGTGGATTTGATAACCAAGGCCAGACAGATATTGGCTCTGCAGGCGTGCTGGGGTTGGGTCAAGGACCCAATTCATTTGCAACACAGACAGCCAGTTTATATGGAGGCAAATTCTCTTACTGCTTAGGAAACTATCTGGAGCCGGCCACATTGACAAGCTCTCTGGTATTCGGTGACATCATCCAAGAATCAGGTGCCTCTTTATTGAGAAAGCCAATTCAATATACTCCGATTCTGCAGGGAGGATCAACATTCTATTACGTGGGTATTGAAGAAATCGCCATAAATGGAGAGAAACTTCCGATATCCATCAGAACTTGGGAGATGGATGAATTTGGCAACGGAGGGACAATAATAGACTCTGGGACTTCACTCACCTATTTAGCAGAGGATGCCTATGAAACAATACTGGAGGCCCTGAATGTGGCAATTACATATCCAAGGGCTACAACATCGTCTCCACAGCAGTTTGATCTCTGCTTCAATACTTCCGGTGTGAGTGAATTGAAATTGCCTGAATTTTCAATTGTTTTGGAAGGAGGAAAAACGTTCAGTCCACCACCAGAGAATTATATCCTGCAGATCCAGGACGACGTCAGCTGCCTGGGACTCAGACCCATTACAGCACCTTCCCCAAGTATCATTGGGAATCTTTTACAGCAAAATTTCTTTCTTCAGTACAACGTCCAGCAATCTCTTCTTGGGTTTGCTCCTGCTGATTGTTCAGTCCATAAATGAAGGCAAAATCGAATAATTTTCGATTGGAGTCTTCACTCCGCACTGAAATTGAATTTATTTTTTGTAATAATGCTGTTTAATCTTCAATAAACACATCTCGTCGCTGTTGGTGGCGGTTTCAATCTGGCAATCTTTTGTAACACATCTCGTCGCTGTTGGTGGCGGTTTCAATCTGGTAATCTTTTGTAACAGTAAACAAACGAGAAGCTCTTCTCTCTCCATTGATGGAAAGGGAAAGCAAAAGGCAATTCTCAAGCGATACATCTTCACATTCATTGTTTTTATTTCTTCATTACACATTCACTGTTTCTGGGTAGGTGATTTTGTAACTGTCCGTCTCGGCGGCGTTGCAAGGGAAAAACCGCAACAAATACGAGGTATATGAGAATATTGAATATTTGCGATTATGAAAGTGTAACGATAAAAACGCGGTTTCCCTTTTCTAATTCCATGGTAATCTTGAATCCATGAGACATTTCCCATCTCATGAAATCCTCTTCGATACTCGGAGTCTTAGTATCCAAGTAGAACAATATTACTCTCTTTGAATTCGAATAGGTAACTAAATATCAGTCTCAATGTCCTACTCTCTTTGAATTTGAATATGTAACTAGATACTCTTACTCTTAGTATCCAAGTAGAAGACTCATACTTGGATATTCTTGAATTTGAATATGTAACCTCACAAGTATAAGACTTATTTAAATTGTACTATATGATTATTATTAATGTAATTTAGAG

Ace file of the UniGene sp_v2.0_unigene9228

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] dbj\|BAB03090.1\| chloroplast nucleoid DNA binding protein-like; nucellin-like protein [Arabidopsis thaliana] gb\|ACD89063.1\| At3g25700 [Arabidopsis thaliana] gb\|AEE77054.1\| aspartyl protease family pro	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protein	-	-	55%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK7

Fln msg: your sequence is longer than subject: 458 - 383

Fln protein: MMGNYIFLGLTLILLHFLHGDSLKMGMKMIHRHSIHSPLYRNFPSKHQAIQALISVDSSRISSHHVQSMAPASPPVGSNVGPKTEFEMPIASAATLGTALYFVELYVGSPPQKILPIADTGSNLVWVNCNPCQNCSFFDPNRSSSLSYVPCYSKECYALSSTLSCIFRPKMACKYSYGYLDNSSTTGAYIHETITLNSTSGKSLKADKVLMGCGFDNQGQTDIGSAGVLGLGQGPNSFATQTASLYGGKFSYCLGNYLEPATLTSSLVFGDIIQESGASLLRKPIQYTPILQGGSTFYYVGIEEIAINGEKLPISIRTWEMDEFGNGGTIIDSGTSLTYLAEDAYETILEALNVAITYPRATTSSPQQFDLCFNTSGVSELKLPEFSIVLEGGKTFSPPPENYILQIQDDVSCLGLRPITAPSPSIIGNLLQQNFFLQYNVQQSLLGFAPADCSVHK*

Protein Length: 459

Fln nts: CGGAAAAATCATATTTGTATCACTACAATTGTTTTCAATGTATTTTACGAAGTTGTATCTATCCTATCCATTTTCACATTCCACCTGTCGGATAAAAGGTCCACCCTATCCTGTAGCTTCTAAAAACACATGTGATTCCATTTCAGATTATTCTTCACCGTCTAACCTACCCTACGCTACAATTTCTTATAATGACTTGCGGAAAATAGGCCATTGACAGTGAATTGTGAGGAAATAAACCCCCAACTTCATGTTATCTGTCAAAAAAATTGCAAGCAATAGATGTTACAATTTTATATTGACAAAGTGCGTAGTGTTCAGCGCGTGACTCTGGCATGCGATTATATTTTCTATTGTTTCTTCTCCCACTGACCCACTTCCATCCCCACCGGCTTAGGGGTTAGCCATTCAATGTTCTTACCACTCTTTTGGCTTATACTCTTATAAAAGCCTCATTGGTGTCAGATTGCAAGCCCAAGATTTAGACGTGATTTTCTGTGCCTATATGATGTTTCTAGTTCATCTGGTTTGATCAATCATATCCCTGTCCTTGAGTCTAGAGTCCCTTCAACGCGGCAATAGTTATTTCATCAACCCTAGAGATTTTACAGAAAGGTCAGAA_-_ATGATGGGCAACTATATTTTTTTGGGTTTGACGTTAATCCTGCTTCACTTCCTCCATGGAGATAGTTTGAAGATGGGGATGAAAATGATCCACCGCCATTCCATACATAGCCCTCTTTACAGGAACTTCCCAAGCAAGCACCAGGCCATACAAGCGCTCATTAGCGTCGACTCCTCCAGAATAAGTTCCCATCATGTGCAATCCATGGCTCCTGCTTCGCCTCCGGTGGGCTCGAACGTCGGACCTAAGACAGAATTTGAAATGCCAATAGCCTCTGCTGCAACTCTGGGAACGGCGCTTTACTTCGTCGAGCTCTATGTTGGTTCTCCTCCTCAGAAAATCCTGCCTATAGCGGACACAGGTAGCAATCTCGTGTGGGTGAACTGCAATCCCTGCCAGAATTGCAGTTTTTTCGATCCCAACAGATCCTCGTCTTTATCATATGTCCCTTGTTACTCCAAAGAATGCTACGCTCTCTCTTCCACATTATCATGCATTTTTAGGCCCAAAATGGCCTGCAAATACAGCTATGGATACTTGGACAACTCTTCCACAACAGGTGCATATATACATGAAACGATTACGTTGAATTCTACATCTGGGAAGTCATTGAAGGCAGACAAAGTGTTGATGGGATGTGGATTTGATAACCAAGGCCAGACAGATATTGGCTCTGCAGGCGTGCTGGGGTTGGGTCAAGGACCCAATTCATTTGCAACACAGACAGCCAGTTTATATGGAGGCAAATTCTCTTACTGCTTAGGAAACTATCTGGAGCCGGCCACATTGACAAGCTCTCTGGTATTCGGTGACATCATCCAAGAATCAGGTGCCTCTTTATTGAGAAAGCCAATTCAATATACTCCGATTCTGCAGGGAGGATCAACATTCTATTACGTGGGTATTGAAGAAATCGCCATAAATGGAGAGAAACTTCCGATATCCATCAGAACTTGGGAGATGGATGAATTTGGCAACGGAGGGACAATAATAGACTCTGGGACTTCACTCACCTATTTAGCAGAGGATGCCTATGAAACAATACTGGAGGCCCTGAATGTGGCAATTACATATCCAAGGGCTACAACATCGTCTCCACAGCAGTTTGATCTCTGCTTCAATACTTCCGGTGTGAGTGAATTGAAATTGCCTGAATTTTCAATTGTTTTGGAAGGAGGAAAAACGTTCAGTCCACCACCAGAGAATTATATCCTGCAGATCCAGGACGACGTCAGCTGCCTGGGACTCAGACCCATTACAGCACCTTCCCCAAGTATCATTGGGAATCTTTTACAGCAAAATTTCTTTCTTCAGTACAACGTCCAGCAATCTCTTCTTGGGTTTGCTCCTGCTGATTGTTCAGTCCATAAATGA___AGGCAAAATCGAATAATTTTCGATTGGAGTCTTCACTCCGCACTGAAATTGAATTTATTTTTTGTAATAATGCTGTTTAATCTTCAATAAACACATCTCGTCGCTGTTGGTGGCGGTTTCAATCTGGCAATCTTTTGTAACACATCTCGTCGCTGTTGGTGGCGGTTTCAATCTGGTAATCTTTTGTAACAGTAAACAAACGAGAAGCTCTTCTCTCTCCATTGATGGAAAGGGAAAGCAAAAGGCAATTCTCAAGCGATACATCTTCACATTCATTGTTTTTATTTCTTCATTACACATTCACTGTTTCTGGGTAGGTGATTTTGTAACTGTCCGTCTCGGCGGCGTTGCAAGGGAAAAACCGCAACAAATACGAGGTATATGAGAATATTGAATATTTGCGATTATGAAAGTGTAACGATAAAAACGCGGTTTCCCTTTTCTAATTCCATGGTAATCTTGAATCCATGAGACATTTCCCATCTCATGAAATCCTCTTCGATACTCGGAGTCTTAGTATCCAAGTAGAACAATATTACTCTCTTTGAATTCGAATAGGTAACTAAATATCAGTCTCAATGTCCTACTCTCTTTGAATTTGAATATGTAACTAGATACTCTTACTCTTAGTATCCAAGTAGAAGACTCATACTTGGATATTCTTGAATTTGAATATGTAACCTCACAAGTATAAGACTTATTTAAATTGTACTATATGATTATTATTAATGTAATTTAGAG

Fln Alignment:

Contig9228___NVGPKTEFEMPIASAATLGTALYFVELYVGSPPQKILPIADTGSNLVWVNCNPCQNCS---FFDPNRSSSLSYVPCYSKECYALSSTLSCIFRPKMACKYSYGYLDNSSTTGAYIHETITLNSTSGKSLKADKVLMGCGFDNQGQTDIGSAGVLGLGQGPNSFATQTASLYGGKFSYCLGNYLEPATLTSSLVFGDIIQESGASLLRKPIQYTPILQGGST-FYYVGIEEIAINGEKLPISIRTWEMDEFGNGGTIIDSGTSLTYLAEDAYETILEALNVAITYPRATTSSPQQFDLCFNTSGVSELKLPEFSIVLEGGKTFSPPPENYIL-QIQDDVSCLGLRPITA--PSPSIIGNLLQQNFFLQYNVQQSLLGFAPADC
C0PSK7______________NTHQMKDIETPVTP--DIGSGEYLIQMAIGTPALSLSAIMDTGSDLVWTKCNPCTDCSTSSIYDPSSSSTYSKVLCQSSLCQP-PSIFSC--NNDGDCEYVYPYGDRSSTSGILSDETFSISSQS-----LPNITFGCGHDNQGFDKVG--GLVGFGRGSLSLVSQLGPSMGNKFSYCLVSRTD-SSKTSPLFIGNT-----ASLEATTVGSTPLVQSSSTNHYYLSLEGISVGGQSLAIPTGTFDIQSDGSGGLIIDSGTTLTFLQQTAYDAVKEAMVSSINLPQA----DGQLDLCFNQQGSSNPGFPSMTFHFKGA-DYDVPKENYLFPDSTSDIVCLAMMPTNSNLGNMAIFGNVQQQNYQILYDNENNVLSFAPTAC

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
150			33	66	0.997452
189		20		80	0.995493
190	80		20		0.995493
192	80	20			0.995493
193	80		20		0.995493
198		20		80	0.995493
201		80		20	0.995493
204	60		20		0.99255
205	80	20			0.995493
206	80			20	0.995493
207	80		20		0.995493
209	80	20			0.995493
210	20		80		0.995493
211		20	80		0.995493
212		80		20	0.995493
216		20		80	0.995493
366		63		36	1.0
459		31	68		1.0
465		68	31		1.0
467		31	68		1.0
468	68	31			1.0
474	68			31	1.0
475	66		33		1.0
476			66	33	1.0
503			6	93	0.999264
504		6	93		0.999264
507		93		6	0.999264
512	93	6			0.999264
514		6	93		0.999264
578		85		14	1.0
1321	10		90		0.90298
1618	77	22			0.999999
1619	77		22		0.999999
1621	77		22		0.999999
1628			75	25	1.0
1690	12		87		0.992554
1692		87	12		0.992554
1694	87	12			0.992554
1697	76		23		1.0
1698		76	23		1.0
1699	76	23			1.0
1701	76		23		1.0
1704	23	76			1.0
1705	76	23			1.0
1706	76			23	1.0
1707		23	76		1.0
1708	23		76		1.0
2130	14		85		0.993533
2181	80			20	0.995493
2182	80	20			0.995493
2183			20	80	0.995493
2318			66	33	0.997452
2391	20		80		0.995493
2411		40		60	1.0
2414	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain